Results 21 - 40 of 225 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14167 | 5' | -63.6 | NC_003521.1 | + | 18181 | 0.66 | 0.686858 |
Target: 5'- aGGCGCUGC--GCGCCUGCcgGCCcuucgaucacaUGUCg -3' miRNA: 3'- cCCGCGGCGggCGUGGACG--UGG-----------ACAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 175728 | 0.66 | 0.686858 |
Target: 5'- cGGCGCCGCUCuuccuccugGCGCCgGUucuCCUuGUCc -3' miRNA: 3'- cCCGCGGCGGG---------CGUGGaCGu--GGA-CAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 165917 | 0.66 | 0.686858 |
Target: 5'- cGGGCcgacuccaccGCCGCCaccgucucgCGCAgCaGCGCCgUGUCg -3' miRNA: 3'- -CCCG----------CGGCGG---------GCGUgGaCGUGG-ACAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 6390 | 0.66 | 0.686858 |
Target: 5'- gGGGCGCCGCa-GCuACCgcgGCGgCgacggGUCu -3' miRNA: 3'- -CCCGCGGCGggCG-UGGa--CGUgGa----CAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 213708 | 0.66 | 0.686858 |
Target: 5'- uGGaguUCGCCCGCACCggccugcGCGCC-GUCg -3' miRNA: 3'- cCCgc-GGCGGGCGUGGa------CGUGGaCAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 22974 | 0.66 | 0.686858 |
Target: 5'- -cGUGCUGCUgGgGCuCUGCGCCUGg- -3' miRNA: 3'- ccCGCGGCGGgCgUG-GACGUGGACag -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 53532 | 0.66 | 0.686858 |
Target: 5'- uGGUGCUGUCCGCuCCgggucgagGUGCCgcUGUCg -3' miRNA: 3'- cCCGCGGCGGGCGuGGa-------CGUGG--ACAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 55932 | 0.66 | 0.68592 |
Target: 5'- gGGGUGCCagcgggguaugagGCCucuguggaCGCugCUGUGCCUGg- -3' miRNA: 3'- -CCCGCGG-------------CGG--------GCGugGACGUGGACag -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 101445 | 0.66 | 0.68592 |
Target: 5'- uGGGCGCggugaacUGCUCGCucACgUGCGCCUcGUa -3' miRNA: 3'- -CCCGCG-------GCGGGCG--UGgACGUGGA-CAg -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 29866 | 0.66 | 0.677465 |
Target: 5'- cGGGaCGCagaagGCCguggCGCugUUGCACCUGg- -3' miRNA: 3'- -CCC-GCGg----CGG----GCGugGACGUGGACag -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 141993 | 0.66 | 0.677465 |
Target: 5'- cGGGaGCUgGCCCGCGCCaaGCAgCUG-Ca -3' miRNA: 3'- -CCCgCGG-CGGGCGUGGa-CGUgGACaG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 121243 | 0.66 | 0.677465 |
Target: 5'- --cCGCCGCCCaGCGuguuCCUGCACUUcUCa -3' miRNA: 3'- cccGCGGCGGG-CGU----GGACGUGGAcAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 177740 | 0.66 | 0.677465 |
Target: 5'- cGGGCaGCgCGCCgGCGCagCUGUACgggGUCg -3' miRNA: 3'- -CCCG-CG-GCGGgCGUG--GACGUGga-CAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 185295 | 0.66 | 0.677465 |
Target: 5'- cGGCGCggCGCUCGCugCgcGUACCcgugGUCa -3' miRNA: 3'- cCCGCG--GCGGGCGugGa-CGUGGa---CAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 224040 | 0.66 | 0.677465 |
Target: 5'- uGGGCGCCGgCaGCAUCUGaaaaccgACCUGc- -3' miRNA: 3'- -CCCGCGGCgGgCGUGGACg------UGGACag -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 120908 | 0.66 | 0.677465 |
Target: 5'- gGGGCgGCUGCuuGCGuuUGCGgCUGcCc -3' miRNA: 3'- -CCCG-CGGCGggCGUggACGUgGACaG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 117527 | 0.66 | 0.677465 |
Target: 5'- uGGaCGCCgagucGCCCGCggACCUG-ACgCUGUCg -3' miRNA: 3'- cCC-GCGG-----CGGGCG--UGGACgUG-GACAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 33680 | 0.66 | 0.677465 |
Target: 5'- cGGcCGUgGCCCGCACguaacgCUGCAgCUGg- -3' miRNA: 3'- cCC-GCGgCGGGCGUG------GACGUgGACag -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 233160 | 0.66 | 0.677465 |
Target: 5'- uGGGCaccGCUGUCCGCGCCgccgugGCgGCCgccGUUa -3' miRNA: 3'- -CCCG---CGGCGGGCGUGGa-----CG-UGGa--CAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 136034 | 0.66 | 0.677465 |
Target: 5'- cGGUGCuucCGCaCGCACCUGUgcgACCUGg- -3' miRNA: 3'- cCCGCG---GCGgGCGUGGACG---UGGACag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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