miRNA display CGI


Results 21 - 40 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14167 5' -63.6 NC_003521.1 + 181665 0.66 0.686858
Target:  5'- cGGCGCCGUgCCGCAgCUGaucCACCa--- -3'
miRNA:   3'- cCCGCGGCG-GGCGUgGAC---GUGGacag -5'
14167 5' -63.6 NC_003521.1 + 213708 0.66 0.686858
Target:  5'- uGGaguUCGCCCGCACCggccugcGCGCC-GUCg -3'
miRNA:   3'- cCCgc-GGCGGGCGUGGa------CGUGGaCAG- -5'
14167 5' -63.6 NC_003521.1 + 53532 0.66 0.686858
Target:  5'- uGGUGCUGUCCGCuCCgggucgagGUGCCgcUGUCg -3'
miRNA:   3'- cCCGCGGCGGGCGuGGa-------CGUGG--ACAG- -5'
14167 5' -63.6 NC_003521.1 + 22974 0.66 0.686858
Target:  5'- -cGUGCUGCUgGgGCuCUGCGCCUGg- -3'
miRNA:   3'- ccCGCGGCGGgCgUG-GACGUGGACag -5'
14167 5' -63.6 NC_003521.1 + 116801 0.66 0.686858
Target:  5'- -aGCaGCCGCUgaCGCACCgcgGCACCUa-- -3'
miRNA:   3'- ccCG-CGGCGG--GCGUGGa--CGUGGAcag -5'
14167 5' -63.6 NC_003521.1 + 165917 0.66 0.686858
Target:  5'- cGGGCcgacuccaccGCCGCCaccgucucgCGCAgCaGCGCCgUGUCg -3'
miRNA:   3'- -CCCG----------CGGCGG---------GCGUgGaCGUGG-ACAG- -5'
14167 5' -63.6 NC_003521.1 + 102831 0.66 0.686858
Target:  5'- cGGCGCUGCgagaagCGCGCCaggGCGCCcGUg -3'
miRNA:   3'- cCCGCGGCGg-----GCGUGGa--CGUGGaCAg -5'
14167 5' -63.6 NC_003521.1 + 55932 0.66 0.68592
Target:  5'- gGGGUGCCagcgggguaugagGCCucuguggaCGCugCUGUGCCUGg- -3'
miRNA:   3'- -CCCGCGG-------------CGG--------GCGugGACGUGGACag -5'
14167 5' -63.6 NC_003521.1 + 101445 0.66 0.68592
Target:  5'- uGGGCGCggugaacUGCUCGCucACgUGCGCCUcGUa -3'
miRNA:   3'- -CCCGCG-------GCGGGCG--UGgACGUGGA-CAg -5'
14167 5' -63.6 NC_003521.1 + 224040 0.66 0.677465
Target:  5'- uGGGCGCCGgCaGCAUCUGaaaaccgACCUGc- -3'
miRNA:   3'- -CCCGCGGCgGgCGUGGACg------UGGACag -5'
14167 5' -63.6 NC_003521.1 + 141993 0.66 0.677465
Target:  5'- cGGGaGCUgGCCCGCGCCaaGCAgCUG-Ca -3'
miRNA:   3'- -CCCgCGG-CGGGCGUGGa-CGUgGACaG- -5'
14167 5' -63.6 NC_003521.1 + 121243 0.66 0.677465
Target:  5'- --cCGCCGCCCaGCGuguuCCUGCACUUcUCa -3'
miRNA:   3'- cccGCGGCGGG-CGU----GGACGUGGAcAG- -5'
14167 5' -63.6 NC_003521.1 + 177740 0.66 0.677465
Target:  5'- cGGGCaGCgCGCCgGCGCagCUGUACgggGUCg -3'
miRNA:   3'- -CCCG-CG-GCGGgCGUG--GACGUGga-CAG- -5'
14167 5' -63.6 NC_003521.1 + 29866 0.66 0.677465
Target:  5'- cGGGaCGCagaagGCCguggCGCugUUGCACCUGg- -3'
miRNA:   3'- -CCC-GCGg----CGG----GCGugGACGUGGACag -5'
14167 5' -63.6 NC_003521.1 + 233160 0.66 0.677465
Target:  5'- uGGGCaccGCUGUCCGCGCCgccgugGCgGCCgccGUUa -3'
miRNA:   3'- -CCCG---CGGCGGGCGUGGa-----CG-UGGa--CAG- -5'
14167 5' -63.6 NC_003521.1 + 185295 0.66 0.677465
Target:  5'- cGGCGCggCGCUCGCugCgcGUACCcgugGUCa -3'
miRNA:   3'- cCCGCG--GCGGGCGugGa-CGUGGa---CAG- -5'
14167 5' -63.6 NC_003521.1 + 33680 0.66 0.677465
Target:  5'- cGGcCGUgGCCCGCACguaacgCUGCAgCUGg- -3'
miRNA:   3'- cCC-GCGgCGGGCGUG------GACGUgGACag -5'
14167 5' -63.6 NC_003521.1 + 193387 0.66 0.677465
Target:  5'- cGGCGcCCGgCUGCAUgUGC-CCUGg- -3'
miRNA:   3'- cCCGC-GGCgGGCGUGgACGuGGACag -5'
14167 5' -63.6 NC_003521.1 + 117527 0.66 0.677465
Target:  5'- uGGaCGCCgagucGCCCGCggACCUG-ACgCUGUCg -3'
miRNA:   3'- cCC-GCGG-----CGGGCG--UGGACgUG-GACAG- -5'
14167 5' -63.6 NC_003521.1 + 120908 0.66 0.677465
Target:  5'- gGGGCgGCUGCuuGCGuuUGCGgCUGcCc -3'
miRNA:   3'- -CCCG-CGGCGggCGUggACGUgGACaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.