miRNA display CGI


Results 21 - 40 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14167 5' -63.6 NC_003521.1 + 69315 0.66 0.705519
Target:  5'- cGGCGCCGUCCuCGCUUuccaaaCAgCUGUCg -3'
miRNA:   3'- cCCGCGGCGGGcGUGGAc-----GUgGACAG- -5'
14167 5' -63.6 NC_003521.1 + 33499 0.66 0.658591
Target:  5'- -cGCGCCcCCCGaagACCUGCuaucCCUGUUu -3'
miRNA:   3'- ccCGCGGcGGGCg--UGGACGu---GGACAG- -5'
14167 5' -63.6 NC_003521.1 + 141993 0.66 0.677465
Target:  5'- cGGGaGCUgGCCCGCGCCaaGCAgCUG-Ca -3'
miRNA:   3'- -CCCgCGG-CGGGCGUGGa-CGUgGACaG- -5'
14167 5' -63.6 NC_003521.1 + 101445 0.66 0.68592
Target:  5'- uGGGCGCggugaacUGCUCGCucACgUGCGCCUcGUa -3'
miRNA:   3'- -CCCGCG-------GCGGGCG--UGgACGUGGA-CAg -5'
14167 5' -63.6 NC_003521.1 + 74706 0.66 0.658591
Target:  5'- cGGCGCCGCggcagCgGCucCCUGCucuCCUGcUCg -3'
miRNA:   3'- cCCGCGGCG-----GgCGu-GGACGu--GGAC-AG- -5'
14167 5' -63.6 NC_003521.1 + 6390 0.66 0.686858
Target:  5'- gGGGCGCCGCa-GCuACCgcgGCGgCgacggGUCu -3'
miRNA:   3'- -CCCGCGGCGggCG-UGGa--CGUgGa----CAG- -5'
14167 5' -63.6 NC_003521.1 + 102831 0.66 0.686858
Target:  5'- cGGCGCUGCgagaagCGCGCCaggGCGCCcGUg -3'
miRNA:   3'- cCCGCGGCGg-----GCGUGGa--CGUGGaCAg -5'
14167 5' -63.6 NC_003521.1 + 22974 0.66 0.686858
Target:  5'- -cGUGCUGCUgGgGCuCUGCGCCUGg- -3'
miRNA:   3'- ccCGCGGCGGgCgUG-GACGUGGACag -5'
14167 5' -63.6 NC_003521.1 + 53952 0.66 0.66804
Target:  5'- -uGUGCUGCUCGUACUUGUccuuGCCgugGUCg -3'
miRNA:   3'- ccCGCGGCGGGCGUGGACG----UGGa--CAG- -5'
14167 5' -63.6 NC_003521.1 + 136034 0.66 0.677465
Target:  5'- cGGUGCuucCGCaCGCACCUGUgcgACCUGg- -3'
miRNA:   3'- cCCGCG---GCGgGCGUGGACG---UGGACag -5'
14167 5' -63.6 NC_003521.1 + 63172 0.66 0.658591
Target:  5'- -cGCGCCGCCC-CAgacuagcuggacCCUGUACUcGUCu -3'
miRNA:   3'- ccCGCGGCGGGcGU------------GGACGUGGaCAG- -5'
14167 5' -63.6 NC_003521.1 + 53532 0.66 0.686858
Target:  5'- uGGUGCUGUCCGCuCCgggucgagGUGCCgcUGUCg -3'
miRNA:   3'- cCCGCGGCGGGCGuGGa-------CGUGG--ACAG- -5'
14167 5' -63.6 NC_003521.1 + 98172 0.66 0.64628
Target:  5'- cGGCGCUGCgccgaccgcugaggCCGCGguucucCUUGUugCUGUCg -3'
miRNA:   3'- cCCGCGGCG--------------GGCGU------GGACGugGACAG- -5'
14167 5' -63.6 NC_003521.1 + 36839 0.66 0.705519
Target:  5'- cGGCGCUG-CUGUGCCggguagaGCACCUGa- -3'
miRNA:   3'- cCCGCGGCgGGCGUGGa------CGUGGACag -5'
14167 5' -63.6 NC_003521.1 + 103326 0.66 0.696211
Target:  5'- aGGCGCUGa-CGCGCCaGCGCCgugcgGUa -3'
miRNA:   3'- cCCGCGGCggGCGUGGaCGUGGa----CAg -5'
14167 5' -63.6 NC_003521.1 + 202655 0.66 0.696211
Target:  5'- cGGCcCCGCUgggaCGC-CCUGCACCUacacccuaaagcGUCa -3'
miRNA:   3'- cCCGcGGCGG----GCGuGGACGUGGA------------CAG- -5'
14167 5' -63.6 NC_003521.1 + 209724 0.66 0.658591
Target:  5'- -uGCGCCGCgUGUACCgGCcGCCgccGUCg -3'
miRNA:   3'- ccCGCGGCGgGCGUGGaCG-UGGa--CAG- -5'
14167 5' -63.6 NC_003521.1 + 183422 0.66 0.66804
Target:  5'- uGGGCGaCCGCaCgGCGCUgugGCGCgaGaUCg -3'
miRNA:   3'- -CCCGC-GGCG-GgCGUGGa--CGUGgaC-AG- -5'
14167 5' -63.6 NC_003521.1 + 143926 0.66 0.66804
Target:  5'- cGGcGCGCCGCauccccaacugcUCGCACCggcUGCGCgaGUg -3'
miRNA:   3'- -CC-CGCGGCG------------GGCGUGG---ACGUGgaCAg -5'
14167 5' -63.6 NC_003521.1 + 165917 0.66 0.686858
Target:  5'- cGGGCcgacuccaccGCCGCCaccgucucgCGCAgCaGCGCCgUGUCg -3'
miRNA:   3'- -CCCG----------CGGCGG---------GCGUgGaCGUGG-ACAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.