miRNA display CGI


Results 21 - 40 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14167 5' -63.6 NC_003521.1 + 61284 0.73 0.298575
Target:  5'- uGGCGCUGagCCGCGC--GCACCUGUCc -3'
miRNA:   3'- cCCGCGGCg-GGCGUGgaCGUGGACAG- -5'
14167 5' -63.6 NC_003521.1 + 129234 0.73 0.305042
Target:  5'- cGGCGCCGCUggccaCGCGCg-GCACCUGg- -3'
miRNA:   3'- cCCGCGGCGG-----GCGUGgaCGUGGACag -5'
14167 5' -63.6 NC_003521.1 + 152759 0.73 0.307659
Target:  5'- cGGGCGCCGCcgaccaCCGCgaccucauccgcgcGCucaacgagcucaagCUGCACCUGUCc -3'
miRNA:   3'- -CCCGCGGCG------GGCG--------------UG--------------GACGUGGACAG- -5'
14167 5' -63.6 NC_003521.1 + 166650 0.73 0.311616
Target:  5'- cGGGCGCCGCggCGCAgCggccagcgGCACCUGg- -3'
miRNA:   3'- -CCCGCGGCGg-GCGUgGa-------CGUGGACag -5'
14167 5' -63.6 NC_003521.1 + 57387 0.72 0.325085
Target:  5'- aGGGCGUCGauCUCGCGCCacaGCGCCgugcgGUCg -3'
miRNA:   3'- -CCCGCGGC--GGGCGUGGa--CGUGGa----CAG- -5'
14167 5' -63.6 NC_003521.1 + 16567 0.72 0.33198
Target:  5'- aGGGCGCgCGCCUGCAUUU-CACCaUGUUc -3'
miRNA:   3'- -CCCGCG-GCGGGCGUGGAcGUGG-ACAG- -5'
14167 5' -63.6 NC_003521.1 + 121034 0.72 0.33198
Target:  5'- cGGCGCCGaCCuCGuCGCCgcUGCGCCgGUCc -3'
miRNA:   3'- cCCGCGGC-GG-GC-GUGG--ACGUGGaCAG- -5'
14167 5' -63.6 NC_003521.1 + 196956 0.72 0.338982
Target:  5'- uGGGCGaCgGCCCGggaGCCggccgggGCGCCUGUg -3'
miRNA:   3'- -CCCGC-GgCGGGCg--UGGa------CGUGGACAg -5'
14167 5' -63.6 NC_003521.1 + 94961 0.72 0.338982
Target:  5'- cGGCGCCGCCCGCcGCCggGC-CCa--- -3'
miRNA:   3'- cCCGCGGCGGGCG-UGGa-CGuGGacag -5'
14167 5' -63.6 NC_003521.1 + 79643 0.72 0.34609
Target:  5'- cGGCGUCGUCUGCugCUGCAgcggcgaCUGUUg -3'
miRNA:   3'- cCCGCGGCGGGCGugGACGUg------GACAG- -5'
14167 5' -63.6 NC_003521.1 + 203438 0.72 0.34609
Target:  5'- cGGGCGCC-CCCGcCGCCUcgaaCACCgcaGUCg -3'
miRNA:   3'- -CCCGCGGcGGGC-GUGGAc---GUGGa--CAG- -5'
14167 5' -63.6 NC_003521.1 + 21647 0.72 0.35113
Target:  5'- gGGGCucaGCCGCCaCuggaacacgcugcgGCGCCUGCugguacccuGCCUGUCu -3'
miRNA:   3'- -CCCG---CGGCGG-G--------------CGUGGACG---------UGGACAG- -5'
14167 5' -63.6 NC_003521.1 + 24202 0.72 0.353305
Target:  5'- cGGCG-CGCCCGCcuACCgucgacUGCugCUGUCu -3'
miRNA:   3'- cCCGCgGCGGGCG--UGG------ACGugGACAG- -5'
14167 5' -63.6 NC_003521.1 + 165037 0.72 0.360626
Target:  5'- uGGUGCUGCCgCgGCGUCUGCACCUGg- -3'
miRNA:   3'- cCCGCGGCGG-G-CGUGGACGUGGACag -5'
14167 5' -63.6 NC_003521.1 + 151815 0.72 0.360626
Target:  5'- uGGCGCCggugggGCCCGCGgcauuUCUGUACCUGa- -3'
miRNA:   3'- cCCGCGG------CGGGCGU-----GGACGUGGACag -5'
14167 5' -63.6 NC_003521.1 + 168617 0.72 0.368051
Target:  5'- uGGGCGUgCGCCaucugcuguUGCugCUGCGCCacgGUCa -3'
miRNA:   3'- -CCCGCG-GCGG---------GCGugGACGUGGa--CAG- -5'
14167 5' -63.6 NC_003521.1 + 144832 0.72 0.368051
Target:  5'- aGGGCuuucgcaacCUGCCCuucacGguCCUGCGCCUGUCg -3'
miRNA:   3'- -CCCGc--------GGCGGG-----CguGGACGUGGACAG- -5'
14167 5' -63.6 NC_003521.1 + 196738 0.71 0.375581
Target:  5'- uGGUGgCGgCgGCGCCUGCACC-GUCu -3'
miRNA:   3'- cCCGCgGCgGgCGUGGACGUGGaCAG- -5'
14167 5' -63.6 NC_003521.1 + 235285 0.71 0.375581
Target:  5'- uGGCGgCGgCCGCGCCgGCugCcGUCa -3'
miRNA:   3'- cCCGCgGCgGGCGUGGaCGugGaCAG- -5'
14167 5' -63.6 NC_003521.1 + 150680 0.71 0.375581
Target:  5'- cGGCGCCGCUgcugcugggUGCugCUGCGCCg--- -3'
miRNA:   3'- cCCGCGGCGG---------GCGugGACGUGGacag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.