miRNA display CGI


Results 21 - 40 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14167 5' -63.6 NC_003521.1 + 26263 0.66 0.649123
Target:  5'- -aGCGCUG-CUGCACCaccagGCACCgGUCu -3'
miRNA:   3'- ccCGCGGCgGGCGUGGa----CGUGGaCAG- -5'
14167 5' -63.6 NC_003521.1 + 26441 0.7 0.431117
Target:  5'- uGGGCGCUGUUCGUgGCCUGCaacggcgugGCCUGg- -3'
miRNA:   3'- -CCCGCGGCGGGCG-UGGACG---------UGGACag -5'
14167 5' -63.6 NC_003521.1 + 29866 0.66 0.677465
Target:  5'- cGGGaCGCagaagGCCguggCGCugUUGCACCUGg- -3'
miRNA:   3'- -CCC-GCGg----CGG----GCGugGACGUGGACag -5'
14167 5' -63.6 NC_003521.1 + 30460 0.75 0.214076
Target:  5'- aGGGUGCCGaugaCgCGCACCUGCcCCUccGUCa -3'
miRNA:   3'- -CCCGCGGCg---G-GCGUGGACGuGGA--CAG- -5'
14167 5' -63.6 NC_003521.1 + 30574 0.67 0.592295
Target:  5'- aGGC-CCGUCCGCGCUaUGCAgCUGa- -3'
miRNA:   3'- cCCGcGGCGGGCGUGG-ACGUgGACag -5'
14167 5' -63.6 NC_003521.1 + 33499 0.66 0.658591
Target:  5'- -cGCGCCcCCCGaagACCUGCuaucCCUGUUu -3'
miRNA:   3'- ccCGCGGcGGGCg--UGGACGu---GGACAG- -5'
14167 5' -63.6 NC_003521.1 + 33680 0.66 0.677465
Target:  5'- cGGcCGUgGCCCGCACguaacgCUGCAgCUGg- -3'
miRNA:   3'- cCC-GCGgCGGGCGUG------GACGUgGACag -5'
14167 5' -63.6 NC_003521.1 + 36839 0.66 0.705519
Target:  5'- cGGCGCUG-CUGUGCCggguagaGCACCUGa- -3'
miRNA:   3'- cCCGCGGCgGGCGUGGa------CGUGGACag -5'
14167 5' -63.6 NC_003521.1 + 37101 0.69 0.527186
Target:  5'- -aGUGUCGCCCcgGCugCUGCugCcGUCg -3'
miRNA:   3'- ccCGCGGCGGG--CGugGACGugGaCAG- -5'
14167 5' -63.6 NC_003521.1 + 38688 0.69 0.48852
Target:  5'- cGGCGCCauccccgaagacaaGCCCGUcccgguACCUGCGCCa--- -3'
miRNA:   3'- cCCGCGG--------------CGGGCG------UGGACGUGGacag -5'
14167 5' -63.6 NC_003521.1 + 39810 0.68 0.536346
Target:  5'- gGGGCGCCGggcgguCCUcCGCCgaugGCGCCUGc- -3'
miRNA:   3'- -CCCGCGGC------GGGcGUGGa---CGUGGACag -5'
14167 5' -63.6 NC_003521.1 + 40828 0.69 0.47273
Target:  5'- gGGGCGggGCCCGCGCCauggacaccuugcUGCACaacGUCa -3'
miRNA:   3'- -CCCGCggCGGGCGUGG-------------ACGUGga-CAG- -5'
14167 5' -63.6 NC_003521.1 + 43167 0.7 0.431117
Target:  5'- uGGCGCUGCugCCGCACgaGCGCCa--- -3'
miRNA:   3'- cCCGCGGCG--GGCGUGgaCGUGGacag -5'
14167 5' -63.6 NC_003521.1 + 45054 0.66 0.686858
Target:  5'- -cGCGCCGCUCGUGCCagGCAacgcgcguCCUG-Cg -3'
miRNA:   3'- ccCGCGGCGGGCGUGGa-CGU--------GGACaG- -5'
14167 5' -63.6 NC_003521.1 + 45236 0.67 0.592295
Target:  5'- aGGCGCCGCCCGgCAgacGgGCCUGa- -3'
miRNA:   3'- cCCGCGGCGGGC-GUggaCgUGGACag -5'
14167 5' -63.6 NC_003521.1 + 48470 0.69 0.509047
Target:  5'- --aCGCCGCCCGUGCgaGCACCg--- -3'
miRNA:   3'- cccGCGGCGGGCGUGgaCGUGGacag -5'
14167 5' -63.6 NC_003521.1 + 49813 0.69 0.509047
Target:  5'- aGGCcuggaugagGCUGCCCacgucCACCUGCGCCUGc- -3'
miRNA:   3'- cCCG---------CGGCGGGc----GUGGACGUGGACag -5'
14167 5' -63.6 NC_003521.1 + 49820 0.66 0.705519
Target:  5'- uGGGCGCCGUgCaguGCGCCgUGCagacgGCC-GUCc -3'
miRNA:   3'- -CCCGCGGCGgG---CGUGG-ACG-----UGGaCAG- -5'
14167 5' -63.6 NC_003521.1 + 53532 0.66 0.686858
Target:  5'- uGGUGCUGUCCGCuCCgggucgagGUGCCgcUGUCg -3'
miRNA:   3'- cCCGCGGCGGGCGuGGa-------CGUGG--ACAG- -5'
14167 5' -63.6 NC_003521.1 + 53952 0.66 0.66804
Target:  5'- -uGUGCUGCUCGUACUUGUccuuGCCgugGUCg -3'
miRNA:   3'- ccCGCGGCGGGCGUGGACG----UGGa--CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.