miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14167 5' -63.6 NC_003521.1 + 2019 0.68 0.542792
Target:  5'- cGGCGUCGCgccccacaacucguCCGCugcuACCUGUGCCgUGUCc -3'
miRNA:   3'- cCCGCGGCG--------------GGCG----UGGACGUGG-ACAG- -5'
14167 5' -63.6 NC_003521.1 + 5683 0.7 0.447848
Target:  5'- cGGGCGcCCGUCCGCGgggaaCggGCGCC-GUCa -3'
miRNA:   3'- -CCCGC-GGCGGGCGUg----Ga-CGUGGaCAG- -5'
14167 5' -63.6 NC_003521.1 + 6390 0.66 0.686858
Target:  5'- gGGGCGCCGCa-GCuACCgcgGCGgCgacggGUCu -3'
miRNA:   3'- -CCCGCGGCGggCG-UGGa--CGUgGa----CAG- -5'
14167 5' -63.6 NC_003521.1 + 12750 0.66 0.690604
Target:  5'- cGGCGCCucggacgugagcuggGaCCCGCGCgUGCGCCc--- -3'
miRNA:   3'- cCCGCGG---------------C-GGGCGUGgACGUGGacag -5'
14167 5' -63.6 NC_003521.1 + 13945 0.66 0.649123
Target:  5'- uGGUGCC-CCCGCAgCUGC-CCUc-- -3'
miRNA:   3'- cCCGCGGcGGGCGUgGACGuGGAcag -5'
14167 5' -63.6 NC_003521.1 + 14955 0.66 0.696211
Target:  5'- -cGCGCauggaGCaCCGCACCUGUGCCc--- -3'
miRNA:   3'- ccCGCGg----CG-GGCGUGGACGUGGacag -5'
14167 5' -63.6 NC_003521.1 + 16567 0.72 0.33198
Target:  5'- aGGGCGCgCGCCUGCAUUU-CACCaUGUUc -3'
miRNA:   3'- -CCCGCG-GCGGGCGUGGAcGUGG-ACAG- -5'
14167 5' -63.6 NC_003521.1 + 17428 0.75 0.239699
Target:  5'- gGGGCGCCacacgGCCCGCGUCgggGCGCCgcgaUGUCg -3'
miRNA:   3'- -CCCGCGG-----CGGGCGUGGa--CGUGG----ACAG- -5'
14167 5' -63.6 NC_003521.1 + 18181 0.66 0.686858
Target:  5'- aGGCGCUGC--GCGCCUGCcgGCCcuucgaucacaUGUCg -3'
miRNA:   3'- cCCGCGGCGggCGUGGACG--UGG-----------ACAG- -5'
14167 5' -63.6 NC_003521.1 + 18289 0.68 0.536346
Target:  5'- aGGGC-CCGCaCCGCaguuucuuucGCCUGUGCUUGg- -3'
miRNA:   3'- -CCCGcGGCG-GGCG----------UGGACGUGGACag -5'
14167 5' -63.6 NC_003521.1 + 18921 0.66 0.705519
Target:  5'- aGGGUGgCGCCgCGCGCCgGCAauCCg--- -3'
miRNA:   3'- -CCCGCgGCGG-GCGUGGaCGU--GGacag -5'
14167 5' -63.6 NC_003521.1 + 19892 0.68 0.554827
Target:  5'- cGGCGCUGauCCUGCugCUGUuCCUGg- -3'
miRNA:   3'- cCCGCGGC--GGGCGugGACGuGGACag -5'
14167 5' -63.6 NC_003521.1 + 21185 0.67 0.6112
Target:  5'- uGGCGggGCCUGUGCCUGUugCUG-Cg -3'
miRNA:   3'- cCCGCggCGGGCGUGGACGugGACaG- -5'
14167 5' -63.6 NC_003521.1 + 21647 0.72 0.35113
Target:  5'- gGGGCucaGCCGCCaCuggaacacgcugcgGCGCCUGCugguacccuGCCUGUCu -3'
miRNA:   3'- -CCCG---CGGCGG-G--------------CGUGGACG---------UGGACAG- -5'
14167 5' -63.6 NC_003521.1 + 21772 0.66 0.662373
Target:  5'- uGGGCGCCGUggCGUGCCUGUccguggcggugauccAcgaCCUGUCc -3'
miRNA:   3'- -CCCGCGGCGg-GCGUGGACG---------------U---GGACAG- -5'
14167 5' -63.6 NC_003521.1 + 22184 0.67 0.601738
Target:  5'- aGGCGCCGCCgGCcguggccgcuuACCgccGCGCgCUGg- -3'
miRNA:   3'- cCCGCGGCGGgCG-----------UGGa--CGUG-GACag -5'
14167 5' -63.6 NC_003521.1 + 22974 0.66 0.686858
Target:  5'- -cGUGCUGCUgGgGCuCUGCGCCUGg- -3'
miRNA:   3'- ccCGCGGCGGgCgUG-GACGUGGACag -5'
14167 5' -63.6 NC_003521.1 + 23370 0.69 0.518085
Target:  5'- uGGUGCUGgccuuCCCGCACCUggagaGCACCgUGUUc -3'
miRNA:   3'- cCCGCGGC-----GGGCGUGGA-----CGUGG-ACAG- -5'
14167 5' -63.6 NC_003521.1 + 23594 0.67 0.6112
Target:  5'- gGGGUGCUgGCCUGCAuccucuucgcgaUCUGCACCgccGUg -3'
miRNA:   3'- -CCCGCGG-CGGGCGU------------GGACGUGGa--CAg -5'
14167 5' -63.6 NC_003521.1 + 24202 0.72 0.353305
Target:  5'- cGGCG-CGCCCGCcuACCgucgacUGCugCUGUCu -3'
miRNA:   3'- cCCGCgGCGGGCG--UGG------ACGugGACAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.