Results 1 - 20 of 225 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14167 | 5' | -63.6 | NC_003521.1 | + | 2019 | 0.68 | 0.542792 |
Target: 5'- cGGCGUCGCgccccacaacucguCCGCugcuACCUGUGCCgUGUCc -3' miRNA: 3'- cCCGCGGCG--------------GGCG----UGGACGUGG-ACAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 5683 | 0.7 | 0.447848 |
Target: 5'- cGGGCGcCCGUCCGCGgggaaCggGCGCC-GUCa -3' miRNA: 3'- -CCCGC-GGCGGGCGUg----Ga-CGUGGaCAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 6390 | 0.66 | 0.686858 |
Target: 5'- gGGGCGCCGCa-GCuACCgcgGCGgCgacggGUCu -3' miRNA: 3'- -CCCGCGGCGggCG-UGGa--CGUgGa----CAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 12750 | 0.66 | 0.690604 |
Target: 5'- cGGCGCCucggacgugagcuggGaCCCGCGCgUGCGCCc--- -3' miRNA: 3'- cCCGCGG---------------C-GGGCGUGgACGUGGacag -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 13945 | 0.66 | 0.649123 |
Target: 5'- uGGUGCC-CCCGCAgCUGC-CCUc-- -3' miRNA: 3'- cCCGCGGcGGGCGUgGACGuGGAcag -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 14955 | 0.66 | 0.696211 |
Target: 5'- -cGCGCauggaGCaCCGCACCUGUGCCc--- -3' miRNA: 3'- ccCGCGg----CG-GGCGUGGACGUGGacag -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 16567 | 0.72 | 0.33198 |
Target: 5'- aGGGCGCgCGCCUGCAUUU-CACCaUGUUc -3' miRNA: 3'- -CCCGCG-GCGGGCGUGGAcGUGG-ACAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 17428 | 0.75 | 0.239699 |
Target: 5'- gGGGCGCCacacgGCCCGCGUCgggGCGCCgcgaUGUCg -3' miRNA: 3'- -CCCGCGG-----CGGGCGUGGa--CGUGG----ACAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 18181 | 0.66 | 0.686858 |
Target: 5'- aGGCGCUGC--GCGCCUGCcgGCCcuucgaucacaUGUCg -3' miRNA: 3'- cCCGCGGCGggCGUGGACG--UGG-----------ACAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 18289 | 0.68 | 0.536346 |
Target: 5'- aGGGC-CCGCaCCGCaguuucuuucGCCUGUGCUUGg- -3' miRNA: 3'- -CCCGcGGCG-GGCG----------UGGACGUGGACag -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 18921 | 0.66 | 0.705519 |
Target: 5'- aGGGUGgCGCCgCGCGCCgGCAauCCg--- -3' miRNA: 3'- -CCCGCgGCGG-GCGUGGaCGU--GGacag -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 19892 | 0.68 | 0.554827 |
Target: 5'- cGGCGCUGauCCUGCugCUGUuCCUGg- -3' miRNA: 3'- cCCGCGGC--GGGCGugGACGuGGACag -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 21185 | 0.67 | 0.6112 |
Target: 5'- uGGCGggGCCUGUGCCUGUugCUG-Cg -3' miRNA: 3'- cCCGCggCGGGCGUGGACGugGACaG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 21647 | 0.72 | 0.35113 |
Target: 5'- gGGGCucaGCCGCCaCuggaacacgcugcgGCGCCUGCugguacccuGCCUGUCu -3' miRNA: 3'- -CCCG---CGGCGG-G--------------CGUGGACG---------UGGACAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 21772 | 0.66 | 0.662373 |
Target: 5'- uGGGCGCCGUggCGUGCCUGUccguggcggugauccAcgaCCUGUCc -3' miRNA: 3'- -CCCGCGGCGg-GCGUGGACG---------------U---GGACAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 22184 | 0.67 | 0.601738 |
Target: 5'- aGGCGCCGCCgGCcguggccgcuuACCgccGCGCgCUGg- -3' miRNA: 3'- cCCGCGGCGGgCG-----------UGGa--CGUG-GACag -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 22974 | 0.66 | 0.686858 |
Target: 5'- -cGUGCUGCUgGgGCuCUGCGCCUGg- -3' miRNA: 3'- ccCGCGGCGGgCgUG-GACGUGGACag -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 23370 | 0.69 | 0.518085 |
Target: 5'- uGGUGCUGgccuuCCCGCACCUggagaGCACCgUGUUc -3' miRNA: 3'- cCCGCGGC-----GGGCGUGGA-----CGUGG-ACAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 23594 | 0.67 | 0.6112 |
Target: 5'- gGGGUGCUgGCCUGCAuccucuucgcgaUCUGCACCgccGUg -3' miRNA: 3'- -CCCGCGG-CGGGCGU------------GGACGUGGa--CAg -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 24202 | 0.72 | 0.353305 |
Target: 5'- cGGCG-CGCCCGCcuACCgucgacUGCugCUGUCu -3' miRNA: 3'- cCCGCgGCGGGCG--UGG------ACGugGACAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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