miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14167 5' -63.6 NC_003521.1 + 150680 0.71 0.375581
Target:  5'- cGGCGCCGCUgcugcugggUGCugCUGCGCCg--- -3'
miRNA:   3'- cCCGCGGCGG---------GCGugGACGUGGacag -5'
14167 5' -63.6 NC_003521.1 + 129234 0.73 0.305042
Target:  5'- cGGCGCCGCUggccaCGCGCg-GCACCUGg- -3'
miRNA:   3'- cCCGCGGCGG-----GCGUGgaCGUGGACag -5'
14167 5' -63.6 NC_003521.1 + 57387 0.72 0.325085
Target:  5'- aGGGCGUCGauCUCGCGCCacaGCGCCgugcgGUCg -3'
miRNA:   3'- -CCCGCGGC--GGGCGUGGa--CGUGGa----CAG- -5'
14167 5' -63.6 NC_003521.1 + 121034 0.72 0.33198
Target:  5'- cGGCGCCGaCCuCGuCGCCgcUGCGCCgGUCc -3'
miRNA:   3'- cCCGCGGC-GG-GC-GUGG--ACGUGGaCAG- -5'
14167 5' -63.6 NC_003521.1 + 79643 0.72 0.34609
Target:  5'- cGGCGUCGUCUGCugCUGCAgcggcgaCUGUUg -3'
miRNA:   3'- cCCGCGGCGGGCGugGACGUg------GACAG- -5'
14167 5' -63.6 NC_003521.1 + 203438 0.72 0.34609
Target:  5'- cGGGCGCC-CCCGcCGCCUcgaaCACCgcaGUCg -3'
miRNA:   3'- -CCCGCGGcGGGC-GUGGAc---GUGGa--CAG- -5'
14167 5' -63.6 NC_003521.1 + 144832 0.72 0.368051
Target:  5'- aGGGCuuucgcaacCUGCCCuucacGguCCUGCGCCUGUCg -3'
miRNA:   3'- -CCCGc--------GGCGGG-----CguGGACGUGGACAG- -5'
14167 5' -63.6 NC_003521.1 + 168617 0.72 0.368051
Target:  5'- uGGGCGUgCGCCaucugcuguUGCugCUGCGCCacgGUCa -3'
miRNA:   3'- -CCCGCG-GCGG---------GCGugGACGUGGa--CAG- -5'
14167 5' -63.6 NC_003521.1 + 196738 0.71 0.375581
Target:  5'- uGGUGgCGgCgGCGCCUGCACC-GUCu -3'
miRNA:   3'- cCCGCgGCgGgCGUGGACGUGGaCAG- -5'
14167 5' -63.6 NC_003521.1 + 61284 0.73 0.298575
Target:  5'- uGGCGCUGagCCGCGC--GCACCUGUCc -3'
miRNA:   3'- cCCGCGGCg-GGCGUGgaCGUGGACAG- -5'
14167 5' -63.6 NC_003521.1 + 223835 0.74 0.279813
Target:  5'- cGGGCGCCuGCugucccugcggCUGCugCUGCGgCUGUCc -3'
miRNA:   3'- -CCCGCGG-CG-----------GGCGugGACGUgGACAG- -5'
14167 5' -63.6 NC_003521.1 + 181329 0.74 0.279813
Target:  5'- aGGGCGCCGUCUGguUCUGUAgCUG-Ca -3'
miRNA:   3'- -CCCGCGGCGGGCguGGACGUgGACaG- -5'
14167 5' -63.6 NC_003521.1 + 73157 0.77 0.169848
Target:  5'- cGGCGCCGCCUcgGCCUGCgACCUGg- -3'
miRNA:   3'- cCCGCGGCGGGcgUGGACG-UGGACag -5'
14167 5' -63.6 NC_003521.1 + 61845 0.77 0.173874
Target:  5'- aGGGCGCCGCggaaCCGCg---GCGCCUGUCc -3'
miRNA:   3'- -CCCGCGGCG----GGCGuggaCGUGGACAG- -5'
14167 5' -63.6 NC_003521.1 + 225771 0.77 0.182182
Target:  5'- -cGCGCCGCUCGCGCUcGCGCCgcucGUCa -3'
miRNA:   3'- ccCGCGGCGGGCGUGGaCGUGGa---CAG- -5'
14167 5' -63.6 NC_003521.1 + 123432 0.76 0.186467
Target:  5'- cGGUGCCaGCacagcgcgugCCGCACCUGCACC-GUCa -3'
miRNA:   3'- cCCGCGG-CG----------GGCGUGGACGUGGaCAG- -5'
14167 5' -63.6 NC_003521.1 + 30460 0.75 0.214076
Target:  5'- aGGGUGCCGaugaCgCGCACCUGCcCCUccGUCa -3'
miRNA:   3'- -CCCGCGGCg---G-GCGUGGACGuGGA--CAG- -5'
14167 5' -63.6 NC_003521.1 + 226964 0.75 0.214076
Target:  5'- cGGCGCCGCCCGCAgagaccCCcGCGCCg--- -3'
miRNA:   3'- cCCGCGGCGGGCGU------GGaCGUGGacag -5'
14167 5' -63.6 NC_003521.1 + 152774 0.74 0.256271
Target:  5'- cGGCGUCGCCUccuGCGCCUugcGCACCgccucgGUCa -3'
miRNA:   3'- cCCGCGGCGGG---CGUGGA---CGUGGa-----CAG- -5'
14167 5' -63.6 NC_003521.1 + 166606 0.74 0.256271
Target:  5'- cGGCGCCgacgGCCUGCugCUGCugucCCUGUa -3'
miRNA:   3'- cCCGCGG----CGGGCGugGACGu---GGACAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.