Results 1 - 20 of 225 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14167 | 5' | -63.6 | NC_003521.1 | + | 73157 | 0.77 | 0.169848 |
Target: 5'- cGGCGCCGCCUcgGCCUGCgACCUGg- -3' miRNA: 3'- cCCGCGGCGGGcgUGGACG-UGGACag -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 196738 | 0.71 | 0.375581 |
Target: 5'- uGGUGgCGgCgGCGCCUGCACC-GUCu -3' miRNA: 3'- cCCGCgGCgGgCGUGGACGUGGaCAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 168617 | 0.72 | 0.368051 |
Target: 5'- uGGGCGUgCGCCaucugcuguUGCugCUGCGCCacgGUCa -3' miRNA: 3'- -CCCGCG-GCGG---------GCGugGACGUGGa--CAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 144832 | 0.72 | 0.368051 |
Target: 5'- aGGGCuuucgcaacCUGCCCuucacGguCCUGCGCCUGUCg -3' miRNA: 3'- -CCCGc--------GGCGGG-----CguGGACGUGGACAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 203438 | 0.72 | 0.34609 |
Target: 5'- cGGGCGCC-CCCGcCGCCUcgaaCACCgcaGUCg -3' miRNA: 3'- -CCCGCGGcGGGC-GUGGAc---GUGGa--CAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 79643 | 0.72 | 0.34609 |
Target: 5'- cGGCGUCGUCUGCugCUGCAgcggcgaCUGUUg -3' miRNA: 3'- cCCGCGGCGGGCGugGACGUg------GACAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 121034 | 0.72 | 0.33198 |
Target: 5'- cGGCGCCGaCCuCGuCGCCgcUGCGCCgGUCc -3' miRNA: 3'- cCCGCGGC-GG-GC-GUGG--ACGUGGaCAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 57387 | 0.72 | 0.325085 |
Target: 5'- aGGGCGUCGauCUCGCGCCacaGCGCCgugcgGUCg -3' miRNA: 3'- -CCCGCGGC--GGGCGUGGa--CGUGGa----CAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 129234 | 0.73 | 0.305042 |
Target: 5'- cGGCGCCGCUggccaCGCGCg-GCACCUGg- -3' miRNA: 3'- cCCGCGGCGG-----GCGUGgaCGUGGACag -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 61284 | 0.73 | 0.298575 |
Target: 5'- uGGCGCUGagCCGCGC--GCACCUGUCc -3' miRNA: 3'- cCCGCGGCg-GGCGUGgaCGUGGACAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 223835 | 0.74 | 0.279813 |
Target: 5'- cGGGCGCCuGCugucccugcggCUGCugCUGCGgCUGUCc -3' miRNA: 3'- -CCCGCGG-CG-----------GGCGugGACGUgGACAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 181329 | 0.74 | 0.279813 |
Target: 5'- aGGGCGCCGUCUGguUCUGUAgCUG-Ca -3' miRNA: 3'- -CCCGCGGCGGGCguGGACGUgGACaG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 166606 | 0.74 | 0.256271 |
Target: 5'- cGGCGCCgacgGCCUGCugCUGCugucCCUGUa -3' miRNA: 3'- cCCGCGG----CGGGCGugGACGu---GGACAg -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 152774 | 0.74 | 0.256271 |
Target: 5'- cGGCGUCGCCUccuGCGCCUugcGCACCgccucgGUCa -3' miRNA: 3'- cCCGCGGCGGG---CGUGGA---CGUGGa-----CAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 226964 | 0.75 | 0.214076 |
Target: 5'- cGGCGCCGCCCGCAgagaccCCcGCGCCg--- -3' miRNA: 3'- cCCGCGGCGGGCGU------GGaCGUGGacag -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 30460 | 0.75 | 0.214076 |
Target: 5'- aGGGUGCCGaugaCgCGCACCUGCcCCUccGUCa -3' miRNA: 3'- -CCCGCGGCg---G-GCGUGGACGuGGA--CAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 123432 | 0.76 | 0.186467 |
Target: 5'- cGGUGCCaGCacagcgcgugCCGCACCUGCACC-GUCa -3' miRNA: 3'- cCCGCGG-CG----------GGCGUGGACGUGGaCAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 225771 | 0.77 | 0.182182 |
Target: 5'- -cGCGCCGCUCGCGCUcGCGCCgcucGUCa -3' miRNA: 3'- ccCGCGGCGGGCGUGGaCGUGGa---CAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 61845 | 0.77 | 0.173874 |
Target: 5'- aGGGCGCCGCggaaCCGCg---GCGCCUGUCc -3' miRNA: 3'- -CCCGCGGCG----GGCGuggaCGUGGACAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 91094 | 0.85 | 0.04754 |
Target: 5'- gGGGC-CCGUCUGCGCCUGCGCCgGUCg -3' miRNA: 3'- -CCCGcGGCGGGCGUGGACGUGGaCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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