miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14167 5' -63.6 NC_003521.1 + 99527 1.11 0.000767
Target:  5'- gGGGCGCCGCCCGCACCUGCACCUGUCg -3'
miRNA:   3'- -CCCGCGGCGGGCGUGGACGUGGACAG- -5'
14167 5' -63.6 NC_003521.1 + 91094 0.85 0.04754
Target:  5'- gGGGC-CCGUCUGCGCCUGCGCCgGUCg -3'
miRNA:   3'- -CCCGcGGCGGGCGUGGACGUGGaCAG- -5'
14167 5' -63.6 NC_003521.1 + 125434 0.77 0.165905
Target:  5'- uGGCgGCCGCCCGCGcCCUGCACaUGcCg -3'
miRNA:   3'- cCCG-CGGCGGGCGU-GGACGUGgACaG- -5'
14167 5' -63.6 NC_003521.1 + 73157 0.77 0.169848
Target:  5'- cGGCGCCGCCUcgGCCUGCgACCUGg- -3'
miRNA:   3'- cCCGCGGCGGGcgUGGACG-UGGACag -5'
14167 5' -63.6 NC_003521.1 + 61845 0.77 0.173874
Target:  5'- aGGGCGCCGCggaaCCGCg---GCGCCUGUCc -3'
miRNA:   3'- -CCCGCGGCG----GGCGuggaCGUGGACAG- -5'
14167 5' -63.6 NC_003521.1 + 124983 0.77 0.182182
Target:  5'- -uGCGCCGCCCGCcugaGCCaGCGCCUGc- -3'
miRNA:   3'- ccCGCGGCGGGCG----UGGaCGUGGACag -5'
14167 5' -63.6 NC_003521.1 + 225771 0.77 0.182182
Target:  5'- -cGCGCCGCUCGCGCUcGCGCCgcucGUCa -3'
miRNA:   3'- ccCGCGGCGGGCGUGGaCGUGGa---CAG- -5'
14167 5' -63.6 NC_003521.1 + 123432 0.76 0.186467
Target:  5'- cGGUGCCaGCacagcgcgugCCGCACCUGCACC-GUCa -3'
miRNA:   3'- cCCGCGG-CG----------GGCGUGGACGUGGaCAG- -5'
14167 5' -63.6 NC_003521.1 + 164647 0.76 0.195303
Target:  5'- uGGCGCCucacgcagGCCCGCgacACCUGUACCUG-Cg -3'
miRNA:   3'- cCCGCGG--------CGGGCG---UGGACGUGGACaG- -5'
14167 5' -63.6 NC_003521.1 + 119330 0.76 0.199397
Target:  5'- -cGUGCCgGCCUGCAagcucuuUCUGCACCUGUCg -3'
miRNA:   3'- ccCGCGG-CGGGCGU-------GGACGUGGACAG- -5'
14167 5' -63.6 NC_003521.1 + 170552 0.76 0.199857
Target:  5'- cGGCGCCGaCCUGCGCCUGC-CC-GUg -3'
miRNA:   3'- cCCGCGGC-GGGCGUGGACGuGGaCAg -5'
14167 5' -63.6 NC_003521.1 + 226964 0.75 0.214076
Target:  5'- cGGCGCCGCCCGCAgagaccCCcGCGCCg--- -3'
miRNA:   3'- cCCGCGGCGGGCGU------GGaCGUGGacag -5'
14167 5' -63.6 NC_003521.1 + 30460 0.75 0.214076
Target:  5'- aGGGUGCCGaugaCgCGCACCUGCcCCUccGUCa -3'
miRNA:   3'- -CCCGCGGCg---G-GCGUGGACGuGGA--CAG- -5'
14167 5' -63.6 NC_003521.1 + 17428 0.75 0.239699
Target:  5'- gGGGCGCCacacgGCCCGCGUCgggGCGCCgcgaUGUCg -3'
miRNA:   3'- -CCCGCGG-----CGGGCGUGGa--CGUGG----ACAG- -5'
14167 5' -63.6 NC_003521.1 + 152774 0.74 0.256271
Target:  5'- cGGCGUCGCCUccuGCGCCUugcGCACCgccucgGUCa -3'
miRNA:   3'- cCCGCGGCGGG---CGUGGA---CGUGGa-----CAG- -5'
14167 5' -63.6 NC_003521.1 + 166606 0.74 0.256271
Target:  5'- cGGCGCCgacgGCCUGCugCUGCugucCCUGUa -3'
miRNA:   3'- cCCGCGG----CGGGCGugGACGu---GGACAg -5'
14167 5' -63.6 NC_003521.1 + 172668 0.74 0.279813
Target:  5'- uGGCGCagaCGCa-GCACCUGCGCCUGa- -3'
miRNA:   3'- cCCGCG---GCGggCGUGGACGUGGACag -5'
14167 5' -63.6 NC_003521.1 + 223835 0.74 0.279813
Target:  5'- cGGGCGCCuGCugucccugcggCUGCugCUGCGgCUGUCc -3'
miRNA:   3'- -CCCGCGG-CG-----------GGCGugGACGUgGACAG- -5'
14167 5' -63.6 NC_003521.1 + 181329 0.74 0.279813
Target:  5'- aGGGCGCCGUCUGguUCUGUAgCUG-Ca -3'
miRNA:   3'- -CCCGCGGCGGGCguGGACGUgGACaG- -5'
14167 5' -63.6 NC_003521.1 + 90847 0.73 0.292214
Target:  5'- -cGCGCCGCCCGUG-CUGCugCUGa- -3'
miRNA:   3'- ccCGCGGCGGGCGUgGACGugGACag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.