Results 1 - 20 of 225 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
14167 | 5' | -63.6 | NC_003521.1 | + | 33680 | 0.66 | 0.677465 |
Target: 5'- cGGcCGUgGCCCGCACguaacgCUGCAgCUGg- -3' miRNA: 3'- cCC-GCGgCGGGCGUG------GACGUgGACag -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 233160 | 0.66 | 0.677465 |
Target: 5'- uGGGCaccGCUGUCCGCGCCgccgugGCgGCCgccGUUa -3' miRNA: 3'- -CCCG---CGGCGGGCGUGGa-----CG-UGGa--CAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 63172 | 0.66 | 0.658591 |
Target: 5'- -cGCGCCGCCC-CAgacuagcuggacCCUGUACUcGUCu -3' miRNA: 3'- ccCGCGGCGGGcGU------------GGACGUGGaCAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 165917 | 0.66 | 0.686858 |
Target: 5'- cGGGCcgacuccaccGCCGCCaccgucucgCGCAgCaGCGCCgUGUCg -3' miRNA: 3'- -CCCG----------CGGCGG---------GCGUgGaCGUGG-ACAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 26263 | 0.66 | 0.649123 |
Target: 5'- -aGCGCUG-CUGCACCaccagGCACCgGUCu -3' miRNA: 3'- ccCGCGGCgGGCGUGGa----CGUGGaCAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 22974 | 0.66 | 0.686858 |
Target: 5'- -cGUGCUGCUgGgGCuCUGCGCCUGg- -3' miRNA: 3'- ccCGCGGCGGgCgUG-GACGUGGACag -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 102831 | 0.66 | 0.686858 |
Target: 5'- cGGCGCUGCgagaagCGCGCCaggGCGCCcGUg -3' miRNA: 3'- cCCGCGGCGg-----GCGUGGa--CGUGGaCAg -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 53952 | 0.66 | 0.66804 |
Target: 5'- -uGUGCUGCUCGUACUUGUccuuGCCgugGUCg -3' miRNA: 3'- ccCGCGGCGGGCGUGGACG----UGGa--CAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 117152 | 0.66 | 0.705519 |
Target: 5'- uGGCGCagaugGCCaucguGCGCCUGUcgcugaACCUGUUu -3' miRNA: 3'- cCCGCGg----CGGg----CGUGGACG------UGGACAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 101445 | 0.66 | 0.68592 |
Target: 5'- uGGGCGCggugaacUGCUCGCucACgUGCGCCUcGUa -3' miRNA: 3'- -CCCGCG-------GCGGGCG--UGgACGUGGA-CAg -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 153516 | 0.66 | 0.658591 |
Target: 5'- aGGCGCuCGCUgCGCACCUucuugaacacgcGCACCUc-- -3' miRNA: 3'- cCCGCG-GCGG-GCGUGGA------------CGUGGAcag -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 136034 | 0.66 | 0.677465 |
Target: 5'- cGGUGCuucCGCaCGCACCUGUgcgACCUGg- -3' miRNA: 3'- cCCGCG---GCGgGCGUGGACG---UGGACag -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 53532 | 0.66 | 0.686858 |
Target: 5'- uGGUGCUGUCCGCuCCgggucgagGUGCCgcUGUCg -3' miRNA: 3'- cCCGCGGCGGGCGuGGa-------CGUGG--ACAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 224269 | 0.66 | 0.658591 |
Target: 5'- aGGCGCgCGCCCuCACCcaggUGCACgCaggGUCc -3' miRNA: 3'- cCCGCG-GCGGGcGUGG----ACGUG-Ga--CAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 92499 | 0.66 | 0.66804 |
Target: 5'- cGGGCGUgGUCCGcCACCU-CACCc--- -3' miRNA: 3'- -CCCGCGgCGGGC-GUGGAcGUGGacag -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 120908 | 0.66 | 0.677465 |
Target: 5'- gGGGCgGCUGCuuGCGuuUGCGgCUGcCc -3' miRNA: 3'- -CCCG-CGGCGggCGUggACGUgGACaG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 143926 | 0.66 | 0.66804 |
Target: 5'- cGGcGCGCCGCauccccaacugcUCGCACCggcUGCGCgaGUg -3' miRNA: 3'- -CC-CGCGGCG------------GGCGUGG---ACGUGgaCAg -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 74706 | 0.66 | 0.658591 |
Target: 5'- cGGCGCCGCggcagCgGCucCCUGCucuCCUGcUCg -3' miRNA: 3'- cCCGCGGCG-----GgCGu-GGACGu--GGAC-AG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 6390 | 0.66 | 0.686858 |
Target: 5'- gGGGCGCCGCa-GCuACCgcgGCGgCgacggGUCu -3' miRNA: 3'- -CCCGCGGCGggCG-UGGa--CGUgGa----CAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 141993 | 0.66 | 0.677465 |
Target: 5'- cGGGaGCUgGCCCGCGCCaaGCAgCUG-Ca -3' miRNA: 3'- -CCCgCGG-CGGGCGUGGa-CGUgGACaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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