Results 1 - 20 of 225 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14167 | 5' | -63.6 | NC_003521.1 | + | 99527 | 1.11 | 0.000767 |
Target: 5'- gGGGCGCCGCCCGCACCUGCACCUGUCg -3' miRNA: 3'- -CCCGCGGCGGGCGUGGACGUGGACAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 165037 | 0.72 | 0.360626 |
Target: 5'- uGGUGCUGCCgCgGCGUCUGCACCUGg- -3' miRNA: 3'- cCCGCGGCGG-G-CGUGGACGUGGACag -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 208959 | 0.71 | 0.375581 |
Target: 5'- cGGUaCCGCUCGCACC-GCGCCgccGUCu -3' miRNA: 3'- cCCGcGGCGGGCGUGGaCGUGGa--CAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 117152 | 0.66 | 0.705519 |
Target: 5'- uGGCGCagaugGCCaucguGCGCCUGUcgcugaACCUGUUu -3' miRNA: 3'- cCCGCGg----CGGg----CGUGGACG------UGGACAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 119330 | 0.76 | 0.199397 |
Target: 5'- -cGUGCCgGCCUGCAagcucuuUCUGCACCUGUCg -3' miRNA: 3'- ccCGCGG-CGGGCGU-------GGACGUGGACAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 170552 | 0.76 | 0.199857 |
Target: 5'- cGGCGCCGaCCUGCGCCUGC-CC-GUg -3' miRNA: 3'- cCCGCGGC-GGGCGUGGACGuGGaCAg -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 172668 | 0.74 | 0.279813 |
Target: 5'- uGGCGCagaCGCa-GCACCUGCGCCUGa- -3' miRNA: 3'- cCCGCG---GCGggCGUGGACGUGGACag -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 90847 | 0.73 | 0.292214 |
Target: 5'- -cGCGCCGCCCGUG-CUGCugCUGa- -3' miRNA: 3'- ccCGCGGCGGGCGUgGACGugGACag -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 16567 | 0.72 | 0.33198 |
Target: 5'- aGGGCGCgCGCCUGCAUUU-CACCaUGUUc -3' miRNA: 3'- -CCCGCG-GCGGGCGUGGAcGUGG-ACAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 151815 | 0.72 | 0.360626 |
Target: 5'- uGGCGCCggugggGCCCGCGgcauuUCUGUACCUGa- -3' miRNA: 3'- cCCGCGG------CGGGCGU-----GGACGUGGACag -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 94961 | 0.72 | 0.338982 |
Target: 5'- cGGCGCCGCCCGCcGCCggGC-CCa--- -3' miRNA: 3'- cCCGCGGCGGGCG-UGGa-CGuGGacag -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 166650 | 0.73 | 0.311616 |
Target: 5'- cGGGCGCCGCggCGCAgCggccagcgGCACCUGg- -3' miRNA: 3'- -CCCGCGGCGg-GCGUgGa-------CGUGGACag -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 125434 | 0.77 | 0.165905 |
Target: 5'- uGGCgGCCGCCCGCGcCCUGCACaUGcCg -3' miRNA: 3'- cCCG-CGGCGGGCGU-GGACGUGgACaG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 21647 | 0.72 | 0.35113 |
Target: 5'- gGGGCucaGCCGCCaCuggaacacgcugcgGCGCCUGCugguacccuGCCUGUCu -3' miRNA: 3'- -CCCG---CGGCGG-G--------------CGUGGACG---------UGGACAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 124983 | 0.77 | 0.182182 |
Target: 5'- -uGCGCCGCCCGCcugaGCCaGCGCCUGc- -3' miRNA: 3'- ccCGCGGCGGGCG----UGGaCGUGGACag -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 152759 | 0.73 | 0.307659 |
Target: 5'- cGGGCGCCGCcgaccaCCGCgaccucauccgcgcGCucaacgagcucaagCUGCACCUGUCc -3' miRNA: 3'- -CCCGCGGCG------GGCG--------------UG--------------GACGUGGACAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 24202 | 0.72 | 0.353305 |
Target: 5'- cGGCG-CGCCCGCcuACCgucgacUGCugCUGUCu -3' miRNA: 3'- cCCGCgGCGGGCG--UGG------ACGugGACAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 235285 | 0.71 | 0.375581 |
Target: 5'- uGGCGgCGgCCGCGCCgGCugCcGUCa -3' miRNA: 3'- cCCGCgGCgGGCGUGGaCGugGaCAG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 164647 | 0.76 | 0.195303 |
Target: 5'- uGGCGCCucacgcagGCCCGCgacACCUGUACCUG-Cg -3' miRNA: 3'- cCCGCGG--------CGGGCG---UGGACGUGGACaG- -5' |
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14167 | 5' | -63.6 | NC_003521.1 | + | 17428 | 0.75 | 0.239699 |
Target: 5'- gGGGCGCCacacgGCCCGCGUCgggGCGCCgcgaUGUCg -3' miRNA: 3'- -CCCGCGG-----CGGGCGUGGa--CGUGG----ACAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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