miRNA display CGI


Results 41 - 60 of 204 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14172 3' -53.5 NC_003521.1 + 47159 0.67 0.980906
Target:  5'- cCGCGCuUGCCGacGAGC-ACGaugaucugauAGCGCAUGa -3'
miRNA:   3'- -GCGUG-AUGGU--CUCGaUGU----------UCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 52187 0.66 0.984749
Target:  5'- uGUGCcGCCGGGGCgGCGAGCucaucagacaGUACGg -3'
miRNA:   3'- gCGUGaUGGUCUCGaUGUUCG----------CGUGC- -5'
14172 3' -53.5 NC_003521.1 + 52407 0.66 0.986435
Target:  5'- -cUACUGCCAGcAG-UACGAGUaGCACGa -3'
miRNA:   3'- gcGUGAUGGUC-UCgAUGUUCG-CGUGC- -5'
14172 3' -53.5 NC_003521.1 + 56031 0.76 0.650615
Target:  5'- gGCgGCcACCAGGGCgucCAGGCGCGCGu -3'
miRNA:   3'- gCG-UGaUGGUCUCGau-GUUCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 58440 0.68 0.965054
Target:  5'- aGCGCUGCCGG-GCgaACuuuccGCGCACc -3'
miRNA:   3'- gCGUGAUGGUCuCGa-UGuu---CGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 59339 0.68 0.965054
Target:  5'- aCGUGCUgaGCCAcgccacGCUGCAGGCgGCGCGc -3'
miRNA:   3'- -GCGUGA--UGGUcu----CGAUGUUCG-CGUGC- -5'
14172 3' -53.5 NC_003521.1 + 60693 0.66 0.987974
Target:  5'- cCGCGCgggggACCcgGGGGCggcGCGGGuCGCACc -3'
miRNA:   3'- -GCGUGa----UGG--UCUCGa--UGUUC-GCGUGc -5'
14172 3' -53.5 NC_003521.1 + 61344 0.74 0.730601
Target:  5'- gGCGCUGCCGGAGCguacccguCAGGaGUACGu -3'
miRNA:   3'- gCGUGAUGGUCUCGau------GUUCgCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 61656 0.71 0.87722
Target:  5'- cCGCACUACCGcauGCUGgAauucAGCGUGCGg -3'
miRNA:   3'- -GCGUGAUGGUcu-CGAUgU----UCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 63885 0.66 0.984749
Target:  5'- gGCGC-GCCgGGAGCUGCA-GCaGUugGg -3'
miRNA:   3'- gCGUGaUGG-UCUCGAUGUuCG-CGugC- -5'
14172 3' -53.5 NC_003521.1 + 63997 0.81 0.360289
Target:  5'- gGCuuuCUGCCccuagaGGAGCUGCAGGCGCugGa -3'
miRNA:   3'- gCGu--GAUGG------UCUCGAUGUUCGCGugC- -5'
14172 3' -53.5 NC_003521.1 + 64032 0.68 0.968186
Target:  5'- gCGCACcaucgACCAGGuGCUGgAGGUGCucaACGa -3'
miRNA:   3'- -GCGUGa----UGGUCU-CGAUgUUCGCG---UGC- -5'
14172 3' -53.5 NC_003521.1 + 64897 0.66 0.982909
Target:  5'- aGCGCUACaaacgcGAGCUGgAgcAGCuGCACGu -3'
miRNA:   3'- gCGUGAUGgu----CUCGAUgU--UCG-CGUGC- -5'
14172 3' -53.5 NC_003521.1 + 67661 0.66 0.986273
Target:  5'- uGCACUGCCuguggcuGGAGCUG-AAGCccaaGUACGc -3'
miRNA:   3'- gCGUGAUGG-------UCUCGAUgUUCG----CGUGC- -5'
14172 3' -53.5 NC_003521.1 + 69430 0.74 0.71093
Target:  5'- gCGCACcACCacgguGGAGUcGCAGGUGCGCGa -3'
miRNA:   3'- -GCGUGaUGG-----UCUCGaUGUUCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 69600 0.69 0.938893
Target:  5'- aCGCGC--CCGGGGCUAuaaaucauagcccguCAgcGGCGCACGu -3'
miRNA:   3'- -GCGUGauGGUCUCGAU---------------GU--UCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 69815 0.69 0.943044
Target:  5'- uCGCACUugaggcgacacaggcACCAGAGCgGCAGGUcgaugacGCGCc -3'
miRNA:   3'- -GCGUGA---------------UGGUCUCGaUGUUCG-------CGUGc -5'
14172 3' -53.5 NC_003521.1 + 70128 0.67 0.971114
Target:  5'- gGcCGCUAUCAGGGCcucgagcugcgGCGAGCGCGg- -3'
miRNA:   3'- gC-GUGAUGGUCUCGa----------UGUUCGCGUgc -5'
14172 3' -53.5 NC_003521.1 + 70400 0.66 0.982909
Target:  5'- -aCACUACCGcGAGCUcaACuAGCGUGCc -3'
miRNA:   3'- gcGUGAUGGU-CUCGA--UGuUCGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 70738 0.66 0.984749
Target:  5'- gGCACUucguCC--AGCUGC-AGCGCGCc -3'
miRNA:   3'- gCGUGAu---GGucUCGAUGuUCGCGUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.