miRNA display CGI


Results 21 - 40 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14172 3' -53.5 NC_003521.1 + 34491 0.73 0.796331
Target:  5'- uCGCGgaAgCAGAGCaGCGAGCGCAgGu -3'
miRNA:   3'- -GCGUgaUgGUCUCGaUGUUCGCGUgC- -5'
14172 3' -53.5 NC_003521.1 + 34575 0.79 0.491357
Target:  5'- uGCACcaggcugacGCCGG-GCUGCAGGCGCGCGc -3'
miRNA:   3'- gCGUGa--------UGGUCuCGAUGUUCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 34879 0.69 0.943493
Target:  5'- aGCACUGCgAGGGCcagcccagcgagacGCAGGCGCccuCGa -3'
miRNA:   3'- gCGUGAUGgUCUCGa-------------UGUUCGCGu--GC- -5'
14172 3' -53.5 NC_003521.1 + 35648 0.66 0.982909
Target:  5'- aCGCGCUGC--GAGCgGCAGGCGaGCu -3'
miRNA:   3'- -GCGUGAUGguCUCGaUGUUCGCgUGc -5'
14172 3' -53.5 NC_003521.1 + 36239 0.68 0.961711
Target:  5'- aGgACUACC-GA-CUGCcGGCGCGCGa -3'
miRNA:   3'- gCgUGAUGGuCUcGAUGuUCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 36374 0.68 0.965054
Target:  5'- aGCACUACCugauGAGCaucacCGAGCaGUACa -3'
miRNA:   3'- gCGUGAUGGu---CUCGau---GUUCG-CGUGc -5'
14172 3' -53.5 NC_003521.1 + 36794 0.69 0.926897
Target:  5'- aCGCGCUG-CGGAGCcGCucGCGgACGg -3'
miRNA:   3'- -GCGUGAUgGUCUCGaUGuuCGCgUGC- -5'
14172 3' -53.5 NC_003521.1 + 37115 0.68 0.958153
Target:  5'- uGCuGCUGCCGucGCUACuGGCGgACGu -3'
miRNA:   3'- gCG-UGAUGGUcuCGAUGuUCGCgUGC- -5'
14172 3' -53.5 NC_003521.1 + 38377 0.68 0.961711
Target:  5'- aGCACUAgCAGGGCcu-GGGCGUAgGg -3'
miRNA:   3'- gCGUGAUgGUCUCGaugUUCGCGUgC- -5'
14172 3' -53.5 NC_003521.1 + 39528 0.67 0.97638
Target:  5'- uCGCGCgGCgAGAGCU---GGCGCAgGu -3'
miRNA:   3'- -GCGUGaUGgUCUCGAuguUCGCGUgC- -5'
14172 3' -53.5 NC_003521.1 + 40363 0.66 0.986273
Target:  5'- gGCGCUGCgCAGGGCcuucuccACGaugucggcgucguGGCGCACc -3'
miRNA:   3'- gCGUGAUG-GUCUCGa------UGU-------------UCGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 42860 0.69 0.931046
Target:  5'- cCGCAaguuccACCAGGGCaucgcgcagcuCAAGCGCGCGc -3'
miRNA:   3'- -GCGUga----UGGUCUCGau---------GUUCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 43119 0.69 0.941681
Target:  5'- aGCGCUGCgGcGAGCgcucGGCGCugGg -3'
miRNA:   3'- gCGUGAUGgU-CUCGauguUCGCGugC- -5'
14172 3' -53.5 NC_003521.1 + 43158 0.68 0.968186
Target:  5'- aCGCGCUGgUGGcGCUGCugcCGCACGa -3'
miRNA:   3'- -GCGUGAUgGUCuCGAUGuucGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 43347 0.67 0.980906
Target:  5'- aCGCcuGCUACCAGAGCgagGCcuacCGCAUc -3'
miRNA:   3'- -GCG--UGAUGGUCUCGa--UGuuc-GCGUGc -5'
14172 3' -53.5 NC_003521.1 + 43357 0.69 0.946142
Target:  5'- cCGCGCgugaacauccGCCAGAGCaUGCGcuGGCGC-CGc -3'
miRNA:   3'- -GCGUGa---------UGGUCUCG-AUGU--UCGCGuGC- -5'
14172 3' -53.5 NC_003521.1 + 43886 0.67 0.97638
Target:  5'- uCGCccacGCUACCGGuGCUGCcGGUG-ACGa -3'
miRNA:   3'- -GCG----UGAUGGUCuCGAUGuUCGCgUGC- -5'
14172 3' -53.5 NC_003521.1 + 44065 0.74 0.749936
Target:  5'- uCGCGCcgGCCGGGGCagcagacggUGCAGGCGC-CGc -3'
miRNA:   3'- -GCGUGa-UGGUCUCG---------AUGUUCGCGuGC- -5'
14172 3' -53.5 NC_003521.1 + 44475 0.66 0.986912
Target:  5'- aCGCACUACCuGcacgcgcuggaaaucGAGCUGCAgccgccgucgucaGGCgGCGCa -3'
miRNA:   3'- -GCGUGAUGG-U---------------CUCGAUGU-------------UCG-CGUGc -5'
14172 3' -53.5 NC_003521.1 + 44870 0.66 0.987974
Target:  5'- -cCGCUGCCAGAGCcuguGGCcCACGc -3'
miRNA:   3'- gcGUGAUGGUCUCGauguUCGcGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.