miRNA display CGI


Results 21 - 40 of 204 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14172 3' -53.5 NC_003521.1 + 155184 0.72 0.830873
Target:  5'- cCGCgGCUGCCGGGGg-GgAGGUGCACGa -3'
miRNA:   3'- -GCG-UGAUGGUCUCgaUgUUCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 159836 0.72 0.830873
Target:  5'- gGCGCUGCgCGGAGgcGCGAGCGUaACGg -3'
miRNA:   3'- gCGUGAUG-GUCUCgaUGUUCGCG-UGC- -5'
14172 3' -53.5 NC_003521.1 + 73691 0.72 0.830873
Target:  5'- gGCGCUGCUcaAGAGCUucgugGAGCGCAgCGa -3'
miRNA:   3'- gCGUGAUGG--UCUCGAug---UUCGCGU-GC- -5'
14172 3' -53.5 NC_003521.1 + 110892 0.72 0.846314
Target:  5'- uGCGCcgucucgGCCAGGuguucgcGCaGCAGGCGCGCGg -3'
miRNA:   3'- gCGUGa------UGGUCU-------CGaUGUUCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 175780 0.72 0.847107
Target:  5'- gGCGCgucauuaGCCGGGGCUGCAcGCGgGCc -3'
miRNA:   3'- gCGUGa------UGGUCUCGAUGUuCGCgUGc -5'
14172 3' -53.5 NC_003521.1 + 108624 0.71 0.862573
Target:  5'- gGCACguuguugGCCAGgcGGCUGCcgaucAGCGCGCa -3'
miRNA:   3'- gCGUGa------UGGUC--UCGAUGu----UCGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 30973 0.71 0.862573
Target:  5'- gGCGCUACgaggUAGAGCUgccGCAAGUGgACGc -3'
miRNA:   3'- gCGUGAUG----GUCUCGA---UGUUCGCgUGC- -5'
14172 3' -53.5 NC_003521.1 + 31087 0.71 0.862573
Target:  5'- --gGCUGCCGuGGCUGCcgcuGCGCACGa -3'
miRNA:   3'- gcgUGAUGGUcUCGAUGuu--CGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 177725 0.71 0.862573
Target:  5'- gGUACUGCUGGAGg-GCGGGCaGCGCGc -3'
miRNA:   3'- gCGUGAUGGUCUCgaUGUUCG-CGUGC- -5'
14172 3' -53.5 NC_003521.1 + 142116 0.71 0.870001
Target:  5'- aCGUGCgACCuGGAGCUGgAGGCGgACGa -3'
miRNA:   3'- -GCGUGaUGG-UCUCGAUgUUCGCgUGC- -5'
14172 3' -53.5 NC_003521.1 + 17636 0.71 0.870002
Target:  5'- aCGCGCUG-CGGAGCUACGuacgccagcaccGGgGCACc -3'
miRNA:   3'- -GCGUGAUgGUCUCGAUGU------------UCgCGUGc -5'
14172 3' -53.5 NC_003521.1 + 108492 0.71 0.870002
Target:  5'- aGCACUuCCAcuAGCacccGCAGGCGCACGc -3'
miRNA:   3'- gCGUGAuGGUc-UCGa---UGUUCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 137022 0.71 0.870002
Target:  5'- cCGCACggucaucucGCCGGAGCacgGCGgcgaGGUGCGCGa -3'
miRNA:   3'- -GCGUGa--------UGGUCUCGa--UGU----UCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 104266 0.71 0.870002
Target:  5'- gGCAgCUGCCAGucGGCgGCgAAGCGCGCc -3'
miRNA:   3'- gCGU-GAUGGUC--UCGaUG-UUCGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 61656 0.71 0.87722
Target:  5'- cCGCACUACCGcauGCUGgAauucAGCGUGCGg -3'
miRNA:   3'- -GCGUGAUGGUcu-CGAUgU----UCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 18730 0.71 0.87722
Target:  5'- aGaCGCUGCCGGcGCUGCAGgGCGgGCu -3'
miRNA:   3'- gC-GUGAUGGUCuCGAUGUU-CGCgUGc -5'
14172 3' -53.5 NC_003521.1 + 104059 0.71 0.87722
Target:  5'- uCGCGCagguagGCCAGcAGCU-CGAGCGgGCGc -3'
miRNA:   3'- -GCGUGa-----UGGUC-UCGAuGUUCGCgUGC- -5'
14172 3' -53.5 NC_003521.1 + 210523 0.71 0.891005
Target:  5'- gCGguCUGCUgaAGAGCUACuucgacgacgugGAGCGCGCc -3'
miRNA:   3'- -GCguGAUGG--UCUCGAUG------------UUCGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 172004 0.7 0.896918
Target:  5'- cCGaCugUGCCAGGGCccGCAagucuauccggacGGCGCGCa -3'
miRNA:   3'- -GC-GugAUGGUCUCGa-UGU-------------UCGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 112917 0.7 0.896918
Target:  5'- aCGCACUGCCAGgacaacAGCgagACGGugccgcuGUGCACGc -3'
miRNA:   3'- -GCGUGAUGGUC------UCGa--UGUU-------CGCGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.