miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14172 3' -53.5 NC_003521.1 + 92940 1.09 0.007472
Target:  5'- aCGCACUACCAGAGCUACAAGCGCACGc -3'
miRNA:   3'- -GCGUGAUGGUCUCGAUGUUCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 63997 0.81 0.360289
Target:  5'- gGCuuuCUGCCccuagaGGAGCUGCAGGCGCugGa -3'
miRNA:   3'- gCGu--GAUGG------UCUCGAUGUUCGCGugC- -5'
14172 3' -53.5 NC_003521.1 + 34575 0.79 0.491357
Target:  5'- uGCACcaggcugacGCCGG-GCUGCAGGCGCGCGc -3'
miRNA:   3'- gCGUGa--------UGGUCuCGAUGUUCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 100646 0.76 0.620148
Target:  5'- aGCGCUAUgaAGAGCUGCAgaAGCGCAa- -3'
miRNA:   3'- gCGUGAUGg-UCUCGAUGU--UCGCGUgc -5'
14172 3' -53.5 NC_003521.1 + 56031 0.76 0.650615
Target:  5'- gGCgGCcACCAGGGCgucCAGGCGCGCGu -3'
miRNA:   3'- gCG-UGaUGGUCUCGau-GUUCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 100733 0.75 0.689993
Target:  5'- aGCGCUACCAgaugaugcaccccGAGCUGgGccuGGCGCACu -3'
miRNA:   3'- gCGUGAUGGU-------------CUCGAUgU---UCGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 69430 0.74 0.71093
Target:  5'- gCGCACcACCacgguGGAGUcGCAGGUGCGCGa -3'
miRNA:   3'- -GCGUGaUGG-----UCUCGaUGUUCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 147843 0.74 0.71093
Target:  5'- cCGUGCaGCCGGGGgUGCAGGCGCGa- -3'
miRNA:   3'- -GCGUGaUGGUCUCgAUGUUCGCGUgc -5'
14172 3' -53.5 NC_003521.1 + 145692 0.74 0.714887
Target:  5'- uCGCACgACgCGGAGCUuucaaggccacgcuCAAGCGCGCGc -3'
miRNA:   3'- -GCGUGaUG-GUCUCGAu-------------GUUCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 106011 0.74 0.7306
Target:  5'- aCGUucaugaGCUGCCAGGGCU-CGGGCGCGa- -3'
miRNA:   3'- -GCG------UGAUGGUCUCGAuGUUCGCGUgc -5'
14172 3' -53.5 NC_003521.1 + 61344 0.74 0.730601
Target:  5'- gGCGCUGCCGGAGCguacccguCAGGaGUACGu -3'
miRNA:   3'- gCGUGAUGGUCUCGau------GUUCgCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 174152 0.74 0.730601
Target:  5'- aGCACgugacgcuCCAGGGcCUGCAGgccGCGCACGa -3'
miRNA:   3'- gCGUGau------GGUCUC-GAUGUU---CGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 21378 0.74 0.749936
Target:  5'- cCGCAgCUgACC-GAGCUguGCGAGCGCugGg -3'
miRNA:   3'- -GCGU-GA-UGGuCUCGA--UGUUCGCGugC- -5'
14172 3' -53.5 NC_003521.1 + 190812 0.74 0.749936
Target:  5'- uGCGCUACaGGAGCcgacgACAGGCGCgguGCGa -3'
miRNA:   3'- gCGUGAUGgUCUCGa----UGUUCGCG---UGC- -5'
14172 3' -53.5 NC_003521.1 + 44065 0.74 0.749936
Target:  5'- uCGCGCcgGCCGGGGCagcagacggUGCAGGCGC-CGc -3'
miRNA:   3'- -GCGUGa-UGGUCUCG---------AUGUUCGCGuGC- -5'
14172 3' -53.5 NC_003521.1 + 193652 0.73 0.777228
Target:  5'- uGCGCUAUCAGAucaucguGCUcgucgGCAAGCGCGgCGg -3'
miRNA:   3'- gCGUGAUGGUCU-------CGA-----UGUUCGCGU-GC- -5'
14172 3' -53.5 NC_003521.1 + 103494 0.73 0.796331
Target:  5'- aCGCGCUGgCgaaAGGGCgagcccagcaGCAGGCGCGCGa -3'
miRNA:   3'- -GCGUGAUgG---UCUCGa---------UGUUCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 114932 0.73 0.796331
Target:  5'- aGCgGCUGCUggAGAGCUGCucGCGCAgCGg -3'
miRNA:   3'- gCG-UGAUGG--UCUCGAUGuuCGCGU-GC- -5'
14172 3' -53.5 NC_003521.1 + 34491 0.73 0.796331
Target:  5'- uCGCGgaAgCAGAGCaGCGAGCGCAgGu -3'
miRNA:   3'- -GCGUgaUgGUCUCGaUGUUCGCGUgC- -5'
14172 3' -53.5 NC_003521.1 + 197872 0.72 0.822486
Target:  5'- uCGCGCUcGCUGG-GCUGCAGGCGgcaGCGg -3'
miRNA:   3'- -GCGUGA-UGGUCuCGAUGUUCGCg--UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.