miRNA display CGI


Results 1 - 20 of 204 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14172 3' -53.5 NC_003521.1 + 42860 0.69 0.931046
Target:  5'- cCGCAaguuccACCAGGGCaucgcgcagcuCAAGCGCGCGc -3'
miRNA:   3'- -GCGUga----UGGUCUCGau---------GUUCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 142116 0.71 0.870001
Target:  5'- aCGUGCgACCuGGAGCUGgAGGCGgACGa -3'
miRNA:   3'- -GCGUGaUGG-UCUCGAUgUUCGCgUGC- -5'
14172 3' -53.5 NC_003521.1 + 153447 0.7 0.897564
Target:  5'- uCGCGCUcguagGCCAGcGGCUcGCAGGC-CACGu -3'
miRNA:   3'- -GCGUGA-----UGGUC-UCGA-UGUUCGcGUGC- -5'
14172 3' -53.5 NC_003521.1 + 181640 0.7 0.897564
Target:  5'- aGCACauuaGCCAGaAGCgggGCAuGGUGCGCGg -3'
miRNA:   3'- gCGUGa---UGGUC-UCGa--UGU-UCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 137288 0.7 0.909996
Target:  5'- aGCG--ACCuGGAGCUGCGGGUgGCGCGg -3'
miRNA:   3'- gCGUgaUGG-UCUCGAUGUUCG-CGUGC- -5'
14172 3' -53.5 NC_003521.1 + 123674 0.7 0.921498
Target:  5'- gCGCACgaugGCCAucugcgccAGCUGCuggucgaucaucGAGCGCACGa -3'
miRNA:   3'- -GCGUGa---UGGUc-------UCGAUG------------UUCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 155415 0.7 0.921498
Target:  5'- gCGCGcCUACCAgGAGCUguGCGAGCuggccgacccGCugGg -3'
miRNA:   3'- -GCGU-GAUGGU-CUCGA--UGUUCG----------CGugC- -5'
14172 3' -53.5 NC_003521.1 + 228006 0.7 0.921498
Target:  5'- aGCuGCUGCCAGuacuGCUu--GGCGCACu -3'
miRNA:   3'- gCG-UGAUGGUCu---CGAuguUCGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 111400 0.69 0.926897
Target:  5'- aCGCGCUGCagcGGCUcccccauuucuGCAAGCGgGCGg -3'
miRNA:   3'- -GCGUGAUGgucUCGA-----------UGUUCGCgUGC- -5'
14172 3' -53.5 NC_003521.1 + 159836 0.72 0.830873
Target:  5'- gGCGCUGCgCGGAGgcGCGAGCGUaACGg -3'
miRNA:   3'- gCGUGAUG-GUCUCgaUGUUCGCG-UGC- -5'
14172 3' -53.5 NC_003521.1 + 73691 0.72 0.830873
Target:  5'- gGCGCUGCUcaAGAGCUucgugGAGCGCAgCGa -3'
miRNA:   3'- gCGUGAUGG--UCUCGAug---UUCGCGU-GC- -5'
14172 3' -53.5 NC_003521.1 + 34491 0.73 0.796331
Target:  5'- uCGCGgaAgCAGAGCaGCGAGCGCAgGu -3'
miRNA:   3'- -GCGUgaUgGUCUCGaUGUUCGCGUgC- -5'
14172 3' -53.5 NC_003521.1 + 34575 0.79 0.491357
Target:  5'- uGCACcaggcugacGCCGG-GCUGCAGGCGCGCGc -3'
miRNA:   3'- gCGUGa--------UGGUCuCGAUGUUCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 56031 0.76 0.650615
Target:  5'- gGCgGCcACCAGGGCgucCAGGCGCGCGu -3'
miRNA:   3'- gCG-UGaUGGUCUCGau-GUUCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 69430 0.74 0.71093
Target:  5'- gCGCACcACCacgguGGAGUcGCAGGUGCGCGa -3'
miRNA:   3'- -GCGUGaUGG-----UCUCGaUGUUCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 147843 0.74 0.71093
Target:  5'- cCGUGCaGCCGGGGgUGCAGGCGCGa- -3'
miRNA:   3'- -GCGUGaUGGUCUCgAUGUUCGCGUgc -5'
14172 3' -53.5 NC_003521.1 + 145692 0.74 0.714887
Target:  5'- uCGCACgACgCGGAGCUuucaaggccacgcuCAAGCGCGCGc -3'
miRNA:   3'- -GCGUGaUG-GUCUCGAu-------------GUUCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 106011 0.74 0.7306
Target:  5'- aCGUucaugaGCUGCCAGGGCU-CGGGCGCGa- -3'
miRNA:   3'- -GCG------UGAUGGUCUCGAuGUUCGCGUgc -5'
14172 3' -53.5 NC_003521.1 + 103494 0.73 0.796331
Target:  5'- aCGCGCUGgCgaaAGGGCgagcccagcaGCAGGCGCGCGa -3'
miRNA:   3'- -GCGUGAUgG---UCUCGa---------UGUUCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 114932 0.73 0.796331
Target:  5'- aGCgGCUGCUggAGAGCUGCucGCGCAgCGg -3'
miRNA:   3'- gCG-UGAUGG--UCUCGAUGuuCGCGU-GC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.