miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14172 3' -53.5 NC_003521.1 + 76238 0.66 0.984749
Target:  5'- gCGCACgucCUcGAGCgugagGCGcgagaGGCGCACGg -3'
miRNA:   3'- -GCGUGau-GGuCUCGa----UGU-----UCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 63885 0.66 0.984749
Target:  5'- gGCGC-GCCgGGAGCUGCA-GCaGUugGg -3'
miRNA:   3'- gCGUGaUGG-UCUCGAUGUuCG-CGugC- -5'
14172 3' -53.5 NC_003521.1 + 166136 0.66 0.989897
Target:  5'- gGCGCcGCCGucGCUgcugcuugcgguagaGCGAGCGCAgGg -3'
miRNA:   3'- gCGUGaUGGUcuCGA---------------UGUUCGCGUgC- -5'
14172 3' -53.5 NC_003521.1 + 181929 0.66 0.982909
Target:  5'- aCGCGC--CCAGGGCUACGAuGCGg--- -3'
miRNA:   3'- -GCGUGauGGUCUCGAUGUU-CGCgugc -5'
14172 3' -53.5 NC_003521.1 + 219059 0.66 0.982909
Target:  5'- gGCAC-GCCAcGGCgccCAGGUGCAUGa -3'
miRNA:   3'- gCGUGaUGGUcUCGau-GUUCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 166388 0.66 0.982909
Target:  5'- gCGCACgUACUuGAGCUGCGucaagucguAGC-CGCGg -3'
miRNA:   3'- -GCGUG-AUGGuCUCGAUGU---------UCGcGUGC- -5'
14172 3' -53.5 NC_003521.1 + 70738 0.66 0.984749
Target:  5'- gGCACUucguCC--AGCUGC-AGCGCGCc -3'
miRNA:   3'- gCGUGAu---GGucUCGAUGuUCGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 153852 0.66 0.982325
Target:  5'- aCGCGCU-CCAGAccagcagguacuGCUcCAgauccucgucguccAGCGCGCGg -3'
miRNA:   3'- -GCGUGAuGGUCU------------CGAuGU--------------UCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 129026 0.66 0.984749
Target:  5'- cCGCGCU-CCAuGGCgucgGCcguguucuuGAGCGCGCGc -3'
miRNA:   3'- -GCGUGAuGGUcUCGa---UG---------UUCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 91994 0.66 0.982909
Target:  5'- gGCGCgaaCGGAGCgggagcgGCGAG-GCGCGg -3'
miRNA:   3'- gCGUGaugGUCUCGa------UGUUCgCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 67661 0.66 0.986273
Target:  5'- uGCACUGCCuguggcuGGAGCUG-AAGCccaaGUACGc -3'
miRNA:   3'- gCGUGAUGG-------UCUCGAUgUUCG----CGUGC- -5'
14172 3' -53.5 NC_003521.1 + 215020 0.66 0.984394
Target:  5'- aCGCACcGCCAGAGCcgucucgugaAAGUGCgACa -3'
miRNA:   3'- -GCGUGaUGGUCUCGaug-------UUCGCG-UGc -5'
14172 3' -53.5 NC_003521.1 + 64897 0.66 0.982909
Target:  5'- aGCGCUACaaacgcGAGCUGgAgcAGCuGCACGu -3'
miRNA:   3'- gCGUGAUGgu----CUCGAUgU--UCG-CGUGC- -5'
14172 3' -53.5 NC_003521.1 + 195766 0.66 0.984749
Target:  5'- aCGCGCguUGCCuG-GC-ACGAGCgGCGCGg -3'
miRNA:   3'- -GCGUG--AUGGuCuCGaUGUUCG-CGUGC- -5'
14172 3' -53.5 NC_003521.1 + 35648 0.66 0.982909
Target:  5'- aCGCGCUGC--GAGCgGCAGGCGaGCu -3'
miRNA:   3'- -GCGUGAUGguCUCGaUGUUCGCgUGc -5'
14172 3' -53.5 NC_003521.1 + 127799 0.66 0.982909
Target:  5'- cCGCACgugcuCCAuGAuCUGcCAGGCGCGCa -3'
miRNA:   3'- -GCGUGau---GGU-CUcGAU-GUUCGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 86146 0.66 0.986435
Target:  5'- gGCACggugACCAGGgagcGCUGCucgaagacGGUGCGCa -3'
miRNA:   3'- gCGUGa---UGGUCU----CGAUGu-------UCGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 88032 0.66 0.984749
Target:  5'- gGUGCaGCUuGAGCUcguUGAGCGCGCGg -3'
miRNA:   3'- gCGUGaUGGuCUCGAu--GUUCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 40363 0.66 0.986273
Target:  5'- gGCGCUGCgCAGGGCcuucuccACGaugucggcgucguGGCGCACc -3'
miRNA:   3'- gCGUGAUG-GUCUCGa------UGU-------------UCGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 144193 0.66 0.984749
Target:  5'- gCGCGCUGgagaaCGGcaAGCUGCAgcAGUGCGCc -3'
miRNA:   3'- -GCGUGAUg----GUC--UCGAUGU--UCGCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.