miRNA display CGI


Results 21 - 40 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14172 3' -53.5 NC_003521.1 + 129986 0.66 0.989374
Target:  5'- cCGuCGCUGCCGcuGCgccgGCGgcGGCGCGCa -3'
miRNA:   3'- -GC-GUGAUGGUcuCGa---UGU--UCGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 232484 0.66 0.989897
Target:  5'- aGCGCUACCccAGCUucguCAagcucaacggggucaAGCGCugGa -3'
miRNA:   3'- gCGUGAUGGucUCGAu---GU---------------UCGCGugC- -5'
14172 3' -53.5 NC_003521.1 + 40363 0.66 0.986273
Target:  5'- gGCGCUGCgCAGGGCcuucuccACGaugucggcgucguGGCGCACc -3'
miRNA:   3'- gCGUGAUG-GUCUCGa------UGU-------------UCGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 67661 0.66 0.986273
Target:  5'- uGCACUGCCuguggcuGGAGCUG-AAGCccaaGUACGc -3'
miRNA:   3'- gCGUGAUGG-------UCUCGAUgUUCG----CGUGC- -5'
14172 3' -53.5 NC_003521.1 + 166388 0.66 0.982909
Target:  5'- gCGCACgUACUuGAGCUGCGucaagucguAGC-CGCGg -3'
miRNA:   3'- -GCGUG-AUGGuCUCGAUGU---------UCGcGUGC- -5'
14172 3' -53.5 NC_003521.1 + 71787 0.66 0.986435
Target:  5'- gCGCGCcgagACC--AGCUugAccGGCGCGCGc -3'
miRNA:   3'- -GCGUGa---UGGucUCGAugU--UCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 30251 0.66 0.987375
Target:  5'- cCGCGCgguUGCCGuGGCgcagcugacccugGCGGGCGCGCu -3'
miRNA:   3'- -GCGUG---AUGGUcUCGa------------UGUUCGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 52187 0.66 0.984749
Target:  5'- uGUGCcGCCGGGGCgGCGAGCucaucagacaGUACGg -3'
miRNA:   3'- gCGUGaUGGUCUCGaUGUUCG----------CGUGC- -5'
14172 3' -53.5 NC_003521.1 + 129026 0.66 0.984749
Target:  5'- cCGCGCU-CCAuGGCgucgGCcguguucuuGAGCGCGCGc -3'
miRNA:   3'- -GCGUGAuGGUcUCGa---UG---------UUCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 86146 0.66 0.986435
Target:  5'- gGCACggugACCAGGgagcGCUGCucgaagacGGUGCGCa -3'
miRNA:   3'- gCGUGa---UGGUCU----CGAUGu-------UCGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 181929 0.66 0.982909
Target:  5'- aCGCGC--CCAGGGCUACGAuGCGg--- -3'
miRNA:   3'- -GCGUGauGGUCUCGAUGUU-CGCgugc -5'
14172 3' -53.5 NC_003521.1 + 110681 0.66 0.986435
Target:  5'- aGCGCgucggugGCCucGAGCUugAGGUcgaagGCGCGg -3'
miRNA:   3'- gCGUGa------UGGu-CUCGAugUUCG-----CGUGC- -5'
14172 3' -53.5 NC_003521.1 + 52407 0.66 0.986435
Target:  5'- -cUACUGCCAGcAG-UACGAGUaGCACGa -3'
miRNA:   3'- gcGUGAUGGUC-UCgAUGUUCG-CGUGC- -5'
14172 3' -53.5 NC_003521.1 + 217397 0.66 0.989374
Target:  5'- gGCACcGCCAG-GCUGagcGGCgGCAUGa -3'
miRNA:   3'- gCGUGaUGGUCuCGAUgu-UCG-CGUGC- -5'
14172 3' -53.5 NC_003521.1 + 60693 0.66 0.987974
Target:  5'- cCGCGCgggggACCcgGGGGCggcGCGGGuCGCACc -3'
miRNA:   3'- -GCGUGa----UGG--UCUCGa--UGUUC-GCGUGc -5'
14172 3' -53.5 NC_003521.1 + 222622 0.66 0.98924
Target:  5'- cCGCG--GCCgacaugugaucgaAGGGCcgGCAGGCGCGCa -3'
miRNA:   3'- -GCGUgaUGG-------------UCUCGa-UGUUCGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 70400 0.66 0.982909
Target:  5'- -aCACUACCGcGAGCUcaACuAGCGUGCc -3'
miRNA:   3'- gcGUGAUGGU-CUCGA--UGuUCGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 149356 0.66 0.982909
Target:  5'- aCGCAUacacCCGcGAGCUGCGcGCGUAUGc -3'
miRNA:   3'- -GCGUGau--GGU-CUCGAUGUuCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 214598 0.66 0.989374
Target:  5'- gGCACcggUACgAGAGCUGCGGGUaGCcCa -3'
miRNA:   3'- gCGUG---AUGgUCUCGAUGUUCG-CGuGc -5'
14172 3' -53.5 NC_003521.1 + 87199 0.66 0.986435
Target:  5'- aCGCACccGCUggcgcaGGAGCUGCuGAGCGC-Ca -3'
miRNA:   3'- -GCGUGa-UGG------UCUCGAUG-UUCGCGuGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.