miRNA display CGI


Results 1 - 20 of 204 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14172 3' -53.5 NC_003521.1 + 11835 0.68 0.954374
Target:  5'- cCGUGCUGCCGGucCUGCGccgcccGCGCACc -3'
miRNA:   3'- -GCGUGAUGGUCucGAUGUu-----CGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 12256 0.67 0.980906
Target:  5'- -uCGCUGCC-GAGCUGCAguccGGUgaacuGCACGg -3'
miRNA:   3'- gcGUGAUGGuCUCGAUGU----UCG-----CGUGC- -5'
14172 3' -53.5 NC_003521.1 + 14481 0.68 0.968186
Target:  5'- gGCGCUACCcgcGGGGCgc---GCGCACc -3'
miRNA:   3'- gCGUGAUGG---UCUCGauguuCGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 14980 0.68 0.957415
Target:  5'- cCGCACcACCAcGAGCgcgccguggaccACAAGCGCgACa -3'
miRNA:   3'- -GCGUGaUGGU-CUCGa-----------UGUUCGCG-UGc -5'
14172 3' -53.5 NC_003521.1 + 15367 0.67 0.973843
Target:  5'- aCGUACUcggACCcuuuuccuuuaaAGAGCcugACGGGCGUGCGa -3'
miRNA:   3'- -GCGUGA---UGG------------UCUCGa--UGUUCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 15730 0.68 0.958153
Target:  5'- cCGCACaACUGGuucCUGCAGGUGCGCc -3'
miRNA:   3'- -GCGUGaUGGUCuc-GAUGUUCGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 16066 0.7 0.909996
Target:  5'- uGCacaACUGCCGGAGCccCGAcGCGCugGc -3'
miRNA:   3'- gCG---UGAUGGUCUCGauGUU-CGCGugC- -5'
14172 3' -53.5 NC_003521.1 + 17174 0.67 0.971114
Target:  5'- gCGCAgcGCUGGcAGCUggGCAGGCGCAUc -3'
miRNA:   3'- -GCGUgaUGGUC-UCGA--UGUUCGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 17636 0.71 0.870002
Target:  5'- aCGCGCUG-CGGAGCUACGuacgccagcaccGGgGCACc -3'
miRNA:   3'- -GCGUGAUgGUCUCGAUGU------------UCgCGUGc -5'
14172 3' -53.5 NC_003521.1 + 18730 0.71 0.87722
Target:  5'- aGaCGCUGCCGGcGCUGCAGgGCGgGCu -3'
miRNA:   3'- gC-GUGAUGGUCuCGAUGUU-CGCgUGc -5'
14172 3' -53.5 NC_003521.1 + 20017 0.67 0.973843
Target:  5'- uGCACgauaucgagUACgAGAGCUACAuccAGgGCGCc -3'
miRNA:   3'- gCGUG---------AUGgUCUCGAUGU---UCgCGUGc -5'
14172 3' -53.5 NC_003521.1 + 20758 0.68 0.961711
Target:  5'- aCGCGCUGCUGGuGCUGuccuuccuGGCGUugGc -3'
miRNA:   3'- -GCGUGAUGGUCuCGAUgu------UCGCGugC- -5'
14172 3' -53.5 NC_003521.1 + 21378 0.74 0.749936
Target:  5'- cCGCAgCUgACC-GAGCUguGCGAGCGCugGg -3'
miRNA:   3'- -GCGU-GA-UGGuCUCGA--UGUUCGCGugC- -5'
14172 3' -53.5 NC_003521.1 + 24482 0.67 0.978732
Target:  5'- aGCGCgUGCUGGAuCUACuGGCGCuACGa -3'
miRNA:   3'- gCGUG-AUGGUCUcGAUGuUCGCG-UGC- -5'
14172 3' -53.5 NC_003521.1 + 30251 0.66 0.987375
Target:  5'- cCGCGCgguUGCCGuGGCgcagcugacccugGCGGGCGCGCu -3'
miRNA:   3'- -GCGUG---AUGGUcUCGa------------UGUUCGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 30973 0.71 0.862573
Target:  5'- gGCGCUACgaggUAGAGCUgccGCAAGUGgACGc -3'
miRNA:   3'- gCGUGAUG----GUCUCGA---UGUUCGCgUGC- -5'
14172 3' -53.5 NC_003521.1 + 31087 0.71 0.862573
Target:  5'- --gGCUGCCGuGGCUGCcgcuGCGCACGa -3'
miRNA:   3'- gcgUGAUGGUcUCGAUGuu--CGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 31887 0.69 0.938893
Target:  5'- cCGCACcGCCAGGccGCggcACAggaacugcggcaggcAGCGCGCGa -3'
miRNA:   3'- -GCGUGaUGGUCU--CGa--UGU---------------UCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 32297 0.69 0.936987
Target:  5'- gGC-CgaauggGCCAGAcaGCUGC-GGCGCACGu -3'
miRNA:   3'- gCGuGa-----UGGUCU--CGAUGuUCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 32383 0.67 0.969967
Target:  5'- gGCGCgugGCCAGguccucgGGCgUGCGacacagcagcccguGGCGCACGg -3'
miRNA:   3'- gCGUGa--UGGUC-------UCG-AUGU--------------UCGCGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.