miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14172 3' -53.5 NC_003521.1 + 239755 0.67 0.97638
Target:  5'- uCGCGCgGCgAGAGCU---GGCGCAgGu -3'
miRNA:   3'- -GCGUGaUGgUCUCGAuguUCGCGUgC- -5'
14172 3' -53.5 NC_003521.1 + 238604 0.68 0.961711
Target:  5'- aGCACUAgCAGGGCcu-GGGCGUAgGg -3'
miRNA:   3'- gCGUGAUgGUCUCGaugUUCGCGUgC- -5'
14172 3' -53.5 NC_003521.1 + 232484 0.66 0.989897
Target:  5'- aGCGCUACCccAGCUucguCAagcucaacggggucaAGCGCugGa -3'
miRNA:   3'- gCGUGAUGGucUCGAu---GU---------------UCGCGugC- -5'
14172 3' -53.5 NC_003521.1 + 228006 0.7 0.921498
Target:  5'- aGCuGCUGCCAGuacuGCUu--GGCGCACu -3'
miRNA:   3'- gCG-UGAUGGUCu---CGAuguUCGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 227203 0.68 0.961711
Target:  5'- gGCACacgaucACCAGGGCUACGaagAGCccgGCACc -3'
miRNA:   3'- gCGUGa-----UGGUCUCGAUGU---UCG---CGUGc -5'
14172 3' -53.5 NC_003521.1 + 225475 0.69 0.93206
Target:  5'- aGUACgucACCAGucgcgacuGCUGCAccAGCGCGCu -3'
miRNA:   3'- gCGUGa--UGGUCu-------CGAUGU--UCGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 224601 0.68 0.965054
Target:  5'- uCGCACUcgGCCAG-GCgGCAGG-GCGCc -3'
miRNA:   3'- -GCGUGA--UGGUCuCGaUGUUCgCGUGc -5'
14172 3' -53.5 NC_003521.1 + 223647 0.67 0.980906
Target:  5'- gCGC-CUGCCc-AGCUGCcAGCGCuGCGc -3'
miRNA:   3'- -GCGuGAUGGucUCGAUGuUCGCG-UGC- -5'
14172 3' -53.5 NC_003521.1 + 222622 0.66 0.98924
Target:  5'- cCGCG--GCCgacaugugaucgaAGGGCcgGCAGGCGCGCa -3'
miRNA:   3'- -GCGUgaUGG-------------UCUCGa-UGUUCGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 219059 0.66 0.982909
Target:  5'- gGCAC-GCCAcGGCgccCAGGUGCAUGa -3'
miRNA:   3'- gCGUGaUGGUcUCGau-GUUCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 217397 0.66 0.989374
Target:  5'- gGCACcGCCAG-GCUGagcGGCgGCAUGa -3'
miRNA:   3'- gCGUGaUGGUCuCGAUgu-UCG-CGUGC- -5'
14172 3' -53.5 NC_003521.1 + 217254 0.69 0.946142
Target:  5'- cCGCGCccACCAccaugacggacGAGgaGCAGGCGCugGc -3'
miRNA:   3'- -GCGUGa-UGGU-----------CUCgaUGUUCGCGugC- -5'
14172 3' -53.5 NC_003521.1 + 216360 0.67 0.971114
Target:  5'- aCGCGCUgGCCAGgcagagcagaagGGCUGCcucGGGCGUccACGg -3'
miRNA:   3'- -GCGUGA-UGGUC------------UCGAUG---UUCGCG--UGC- -5'
14172 3' -53.5 NC_003521.1 + 215020 0.66 0.984394
Target:  5'- aCGCACcGCCAGAGCcgucucgugaAAGUGCgACa -3'
miRNA:   3'- -GCGUGaUGGUCUCGaug-------UUCGCG-UGc -5'
14172 3' -53.5 NC_003521.1 + 214598 0.66 0.989374
Target:  5'- gGCACcggUACgAGAGCUGCGGGUaGCcCa -3'
miRNA:   3'- gCGUG---AUGgUCUCGAUGUUCG-CGuGc -5'
14172 3' -53.5 NC_003521.1 + 213756 0.66 0.986435
Target:  5'- uGCGCUACCuGGGCU-CGu-CGCugGu -3'
miRNA:   3'- gCGUGAUGGuCUCGAuGUucGCGugC- -5'
14172 3' -53.5 NC_003521.1 + 212643 0.68 0.961711
Target:  5'- cCGUACUGgCGGAGCaUGCAGGguaucaGCAUGc -3'
miRNA:   3'- -GCGUGAUgGUCUCG-AUGUUCg-----CGUGC- -5'
14172 3' -53.5 NC_003521.1 + 210523 0.71 0.891005
Target:  5'- gCGguCUGCUgaAGAGCUACuucgacgacgugGAGCGCGCc -3'
miRNA:   3'- -GCguGAUGG--UCUCGAUG------------UUCGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 208415 0.66 0.986435
Target:  5'- cCGUGC-GCCAcGGGCUGCuguGuCGCACGc -3'
miRNA:   3'- -GCGUGaUGGU-CUCGAUGuu-C-GCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 205241 0.66 0.989374
Target:  5'- uCGCugUGCCAGGGCgguUAgGAGauCGCAg- -3'
miRNA:   3'- -GCGugAUGGUCUCG---AUgUUC--GCGUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.