miRNA display CGI


Results 21 - 40 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14172 3' -53.5 NC_003521.1 + 208415 0.66 0.986435
Target:  5'- cCGUGC-GCCAcGGGCUGCuguGuCGCACGc -3'
miRNA:   3'- -GCGUGaUGGU-CUCGAUGuu-C-GCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 96882 0.66 0.986435
Target:  5'- uCGCGCaGCCGGuGCgaGCAguuggggaugcGGCGCGCc -3'
miRNA:   3'- -GCGUGaUGGUCuCGa-UGU-----------UCGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 87199 0.66 0.986435
Target:  5'- aCGCACccGCUggcgcaGGAGCUGCuGAGCGC-Ca -3'
miRNA:   3'- -GCGUGa-UGG------UCUCGAUG-UUCGCGuGc -5'
14172 3' -53.5 NC_003521.1 + 131596 0.66 0.986435
Target:  5'- aCGCGC-ACCgAGAGCcACGAGgaGUGCGa -3'
miRNA:   3'- -GCGUGaUGG-UCUCGaUGUUCg-CGUGC- -5'
14172 3' -53.5 NC_003521.1 + 213756 0.66 0.986435
Target:  5'- uGCGCUACCuGGGCU-CGu-CGCugGu -3'
miRNA:   3'- gCGUGAUGGuCUCGAuGUucGCGugC- -5'
14172 3' -53.5 NC_003521.1 + 86146 0.66 0.986435
Target:  5'- gGCACggugACCAGGgagcGCUGCucgaagacGGUGCGCa -3'
miRNA:   3'- gCGUGa---UGGUCU----CGAUGu-------UCGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 71787 0.66 0.986435
Target:  5'- gCGCGCcgagACC--AGCUugAccGGCGCGCGc -3'
miRNA:   3'- -GCGUGa---UGGucUCGAugU--UCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 96682 0.66 0.986435
Target:  5'- aGCAacGCCucGGAGCc-CAGGCGCACc -3'
miRNA:   3'- gCGUgaUGG--UCUCGauGUUCGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 52407 0.66 0.986435
Target:  5'- -cUACUGCCAGcAG-UACGAGUaGCACGa -3'
miRNA:   3'- gcGUGAUGGUC-UCgAUGUUCG-CGUGC- -5'
14172 3' -53.5 NC_003521.1 + 110681 0.66 0.986435
Target:  5'- aGCGCgucggugGCCucGAGCUugAGGUcgaagGCGCGg -3'
miRNA:   3'- gCGUGa------UGGu-CUCGAugUUCG-----CGUGC- -5'
14172 3' -53.5 NC_003521.1 + 67661 0.66 0.986273
Target:  5'- uGCACUGCCuguggcuGGAGCUG-AAGCccaaGUACGc -3'
miRNA:   3'- gCGUGAUGG-------UCUCGAUgUUCG----CGUGC- -5'
14172 3' -53.5 NC_003521.1 + 40363 0.66 0.986273
Target:  5'- gGCGCUGCgCAGGGCcuucuccACGaugucggcgucguGGCGCACc -3'
miRNA:   3'- gCGUGAUG-GUCUCGa------UGU-------------UCGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 70738 0.66 0.984749
Target:  5'- gGCACUucguCC--AGCUGC-AGCGCGCc -3'
miRNA:   3'- gCGUGAu---GGucUCGAUGuUCGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 76238 0.66 0.984749
Target:  5'- gCGCACgucCUcGAGCgugagGCGcgagaGGCGCACGg -3'
miRNA:   3'- -GCGUGau-GGuCUCGa----UGU-----UCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 195766 0.66 0.984749
Target:  5'- aCGCGCguUGCCuG-GC-ACGAGCgGCGCGg -3'
miRNA:   3'- -GCGUG--AUGGuCuCGaUGUUCG-CGUGC- -5'
14172 3' -53.5 NC_003521.1 + 129026 0.66 0.984749
Target:  5'- cCGCGCU-CCAuGGCgucgGCcguguucuuGAGCGCGCGc -3'
miRNA:   3'- -GCGUGAuGGUcUCGa---UG---------UUCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 84735 0.66 0.984749
Target:  5'- gGCACUGCCGucgucgucuuGCU-CGGGCGCGgCGg -3'
miRNA:   3'- gCGUGAUGGUcu--------CGAuGUUCGCGU-GC- -5'
14172 3' -53.5 NC_003521.1 + 52187 0.66 0.984749
Target:  5'- uGUGCcGCCGGGGCgGCGAGCucaucagacaGUACGg -3'
miRNA:   3'- gCGUGaUGGUCUCGaUGUUCG----------CGUGC- -5'
14172 3' -53.5 NC_003521.1 + 197926 0.66 0.984749
Target:  5'- uCGCuggGCU-CCAGAuCgACGGGCGCGCGc -3'
miRNA:   3'- -GCG---UGAuGGUCUcGaUGUUCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 139784 0.66 0.984749
Target:  5'- gGCgGCcGCCauGGAGCUGCAcgGGCGUGCc -3'
miRNA:   3'- gCG-UGaUGG--UCUCGAUGU--UCGCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.