miRNA display CGI


Results 41 - 60 of 204 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14172 3' -53.5 NC_003521.1 + 88032 0.66 0.984749
Target:  5'- gGUGCaGCUuGAGCUcguUGAGCGCGCGg -3'
miRNA:   3'- gCGUGaUGGuCUCGAu--GUUCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 144193 0.66 0.984749
Target:  5'- gCGCGCUGgagaaCGGcaAGCUGCAgcAGUGCGCc -3'
miRNA:   3'- -GCGUGAUg----GUC--UCGAUGU--UCGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 129026 0.66 0.984749
Target:  5'- cCGCGCU-CCAuGGCgucgGCcguguucuuGAGCGCGCGc -3'
miRNA:   3'- -GCGUGAuGGUcUCGa---UG---------UUCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 195766 0.66 0.984749
Target:  5'- aCGCGCguUGCCuG-GC-ACGAGCgGCGCGg -3'
miRNA:   3'- -GCGUG--AUGGuCuCGaUGUUCG-CGUGC- -5'
14172 3' -53.5 NC_003521.1 + 215020 0.66 0.984394
Target:  5'- aCGCACcGCCAGAGCcgucucgugaAAGUGCgACa -3'
miRNA:   3'- -GCGUGaUGGUCUCGaug-------UUCGCG-UGc -5'
14172 3' -53.5 NC_003521.1 + 70400 0.66 0.982909
Target:  5'- -aCACUACCGcGAGCUcaACuAGCGUGCc -3'
miRNA:   3'- gcGUGAUGGU-CUCGA--UGuUCGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 219059 0.66 0.982909
Target:  5'- gGCAC-GCCAcGGCgccCAGGUGCAUGa -3'
miRNA:   3'- gCGUGaUGGUcUCGau-GUUCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 64897 0.66 0.982909
Target:  5'- aGCGCUACaaacgcGAGCUGgAgcAGCuGCACGu -3'
miRNA:   3'- gCGUGAUGgu----CUCGAUgU--UCG-CGUGC- -5'
14172 3' -53.5 NC_003521.1 + 91994 0.66 0.982909
Target:  5'- gGCGCgaaCGGAGCgggagcgGCGAG-GCGCGg -3'
miRNA:   3'- gCGUGaugGUCUCGa------UGUUCgCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 127799 0.66 0.982909
Target:  5'- cCGCACgugcuCCAuGAuCUGcCAGGCGCGCa -3'
miRNA:   3'- -GCGUGau---GGU-CUcGAU-GUUCGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 181929 0.66 0.982909
Target:  5'- aCGCGC--CCAGGGCUACGAuGCGg--- -3'
miRNA:   3'- -GCGUGauGGUCUCGAUGUU-CGCgugc -5'
14172 3' -53.5 NC_003521.1 + 166388 0.66 0.982909
Target:  5'- gCGCACgUACUuGAGCUGCGucaagucguAGC-CGCGg -3'
miRNA:   3'- -GCGUG-AUGGuCUCGAUGU---------UCGcGUGC- -5'
14172 3' -53.5 NC_003521.1 + 35648 0.66 0.982909
Target:  5'- aCGCGCUGC--GAGCgGCAGGCGaGCu -3'
miRNA:   3'- -GCGUGAUGguCUCGaUGUUCGCgUGc -5'
14172 3' -53.5 NC_003521.1 + 149356 0.66 0.982909
Target:  5'- aCGCAUacacCCGcGAGCUGCGcGCGUAUGc -3'
miRNA:   3'- -GCGUGau--GGU-CUCGAUGUuCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 153852 0.66 0.982325
Target:  5'- aCGCGCU-CCAGAccagcagguacuGCUcCAgauccucgucguccAGCGCGCGg -3'
miRNA:   3'- -GCGUGAuGGUCU------------CGAuGU--------------UCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 150685 0.67 0.980906
Target:  5'- cCGCuGCUGCUGGGuGCUGCu-GCGCcgGCGg -3'
miRNA:   3'- -GCG-UGAUGGUCU-CGAUGuuCGCG--UGC- -5'
14172 3' -53.5 NC_003521.1 + 103190 0.67 0.980906
Target:  5'- aCGUACUcgACCGcgaugcgcGAGCgguagGCGuccAGCGCGCGg -3'
miRNA:   3'- -GCGUGA--UGGU--------CUCGa----UGU---UCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 12256 0.67 0.980906
Target:  5'- -uCGCUGCC-GAGCUGCAguccGGUgaacuGCACGg -3'
miRNA:   3'- gcGUGAUGGuCUCGAUGU----UCG-----CGUGC- -5'
14172 3' -53.5 NC_003521.1 + 223647 0.67 0.980906
Target:  5'- gCGC-CUGCCc-AGCUGCcAGCGCuGCGc -3'
miRNA:   3'- -GCGuGAUGGucUCGAUGuUCGCG-UGC- -5'
14172 3' -53.5 NC_003521.1 + 43347 0.67 0.980906
Target:  5'- aCGCcuGCUACCAGAGCgagGCcuacCGCAUc -3'
miRNA:   3'- -GCG--UGAUGGUCUCGa--UGuuc-GCGUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.