miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14172 5' -63.8 NC_003521.1 + 74321 0.68 0.525106
Target:  5'- cUCuUCGguCGCCUGCACCCUCaGCaccUGCAc -3'
miRNA:   3'- aAG-AGC--GCGGACGUGGGGGcCG---ACGU- -5'
14172 5' -63.8 NC_003521.1 + 33762 0.68 0.525106
Target:  5'- gUCUCcuGC-CCUGCaacGCCUCCGGcCUGCGg -3'
miRNA:   3'- aAGAG--CGcGGACG---UGGGGGCC-GACGU- -5'
14172 5' -63.8 NC_003521.1 + 6680 0.68 0.515888
Target:  5'- -gCUCGUgcugcaggGCCUGCGCCCgCGagcGCUGCu -3'
miRNA:   3'- aaGAGCG--------CGGACGUGGGgGC---CGACGu -5'
14172 5' -63.8 NC_003521.1 + 91101 0.68 0.515888
Target:  5'- gUCU-GCGCCUGCGCcggucggggauuCCCCGGCa--- -3'
miRNA:   3'- aAGAgCGCGGACGUG------------GGGGCCGacgu -5'
14172 5' -63.8 NC_003521.1 + 132319 0.68 0.515888
Target:  5'- aUCUCcCGCgUGCGCCUgCGGgUGCu -3'
miRNA:   3'- aAGAGcGCGgACGUGGGgGCCgACGu -5'
14172 5' -63.8 NC_003521.1 + 32606 0.68 0.506736
Target:  5'- cUCUgGUGUCUGUACCUgCGacuGCUGCAg -3'
miRNA:   3'- aAGAgCGCGGACGUGGGgGC---CGACGU- -5'
14172 5' -63.8 NC_003521.1 + 163142 0.68 0.497654
Target:  5'- gUCuUCGCcaGCgUGC-CCCCCGGcCUGCu -3'
miRNA:   3'- aAG-AGCG--CGgACGuGGGGGCC-GACGu -5'
14172 5' -63.8 NC_003521.1 + 172555 0.68 0.488646
Target:  5'- aUCUCGUGCC-GCugUCCCGGggucgGCGg -3'
miRNA:   3'- aAGAGCGCGGaCGugGGGGCCga---CGU- -5'
14172 5' -63.8 NC_003521.1 + 179247 0.68 0.488646
Target:  5'- cUUCUgGCGCCUGaACUCgCCGGCcaGCAg -3'
miRNA:   3'- -AAGAgCGCGGACgUGGG-GGCCGa-CGU- -5'
14172 5' -63.8 NC_003521.1 + 138448 0.68 0.479715
Target:  5'- gUCccCGCGCgUGCAUCgCCGGCgGCGc -3'
miRNA:   3'- aAGa-GCGCGgACGUGGgGGCCGaCGU- -5'
14172 5' -63.8 NC_003521.1 + 135168 0.68 0.479715
Target:  5'- --aUCGUGCCgccCACCCCCGaGCUGg- -3'
miRNA:   3'- aagAGCGCGGac-GUGGGGGC-CGACgu -5'
14172 5' -63.8 NC_003521.1 + 143928 0.69 0.469985
Target:  5'- ---gCGCGCC-GCAUCCCCaacugcucgcaccGGCUGCGc -3'
miRNA:   3'- aagaGCGCGGaCGUGGGGG-------------CCGACGU- -5'
14172 5' -63.8 NC_003521.1 + 2311 0.69 0.453419
Target:  5'- cUCUCGCaCCUGCugcgcgccgGCCUCCuggGGCUGCu -3'
miRNA:   3'- aAGAGCGcGGACG---------UGGGGG---CCGACGu -5'
14172 5' -63.8 NC_003521.1 + 202539 0.69 0.453419
Target:  5'- cUCUCGCaCCUGCugcgcgccgGCCUCCuggGGCUGCu -3'
miRNA:   3'- aAGAGCGcGGACG---------UGGGGG---CCGACGu -5'
14172 5' -63.8 NC_003521.1 + 39834 0.69 0.444828
Target:  5'- --aUgGCGCCUGCuugGCCUCCGGCgugggGCu -3'
miRNA:   3'- aagAgCGCGGACG---UGGGGGCCGa----CGu -5'
14172 5' -63.8 NC_003521.1 + 240061 0.69 0.444828
Target:  5'- --aUgGCGCCUGCuugGCCUCCGGCgugggGCu -3'
miRNA:   3'- aagAgCGCGGACG---UGGGGGCCGa----CGu -5'
14172 5' -63.8 NC_003521.1 + 237379 0.69 0.444828
Target:  5'- ----aGCaGCCUGUGCCCUCGGCgucgGCAu -3'
miRNA:   3'- aagagCG-CGGACGUGGGGGCCGa---CGU- -5'
14172 5' -63.8 NC_003521.1 + 137683 0.69 0.427925
Target:  5'- ---aCGCGCCUGCugCCCCugGGCUc-- -3'
miRNA:   3'- aagaGCGCGGACGugGGGG--CCGAcgu -5'
14172 5' -63.8 NC_003521.1 + 138467 0.7 0.419617
Target:  5'- cUUCUUcaagaGCGCCUGCcgccaCCCCGGCgucgGCGc -3'
miRNA:   3'- -AAGAG-----CGCGGACGug---GGGGCCGa---CGU- -5'
14172 5' -63.8 NC_003521.1 + 156615 0.7 0.419617
Target:  5'- cUCUCGCGCCUGgugcugcgcgaCGCCCUgGGCUu-- -3'
miRNA:   3'- aAGAGCGCGGAC-----------GUGGGGgCCGAcgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.