miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14172 5' -63.8 NC_003521.1 + 116419 0.66 0.600673
Target:  5'- aUCUCGCGgCUGuCGgCCCUGuuugucauGCUGCGa -3'
miRNA:   3'- aAGAGCGCgGAC-GUgGGGGC--------CGACGU- -5'
14172 5' -63.8 NC_003521.1 + 148785 0.67 0.591097
Target:  5'- --gUCGCGCCgaGgAgCCgCGGCUGCGg -3'
miRNA:   3'- aagAGCGCGGa-CgUgGGgGCCGACGU- -5'
14172 5' -63.8 NC_003521.1 + 105829 0.67 0.591097
Target:  5'- ---aCGCcacgGCCUGC-CCCugcuaCCGGCUGCAc -3'
miRNA:   3'- aagaGCG----CGGACGuGGG-----GGCCGACGU- -5'
14172 5' -63.8 NC_003521.1 + 210371 0.67 0.591097
Target:  5'- ---gCGCGUCaucgGCACCCUCGGCcGCc -3'
miRNA:   3'- aagaGCGCGGa---CGUGGGGGCCGaCGu -5'
14172 5' -63.8 NC_003521.1 + 90184 0.67 0.572029
Target:  5'- cUUCgUCGCGCa--CGCCCCCGcCUGCGc -3'
miRNA:   3'- -AAG-AGCGCGgacGUGGGGGCcGACGU- -5'
14172 5' -63.8 NC_003521.1 + 226059 0.67 0.572029
Target:  5'- -cCUCG-GCCacgaagGCGCgCCCCGGCcGCGg -3'
miRNA:   3'- aaGAGCgCGGa-----CGUG-GGGGCCGaCGU- -5'
14172 5' -63.8 NC_003521.1 + 75239 0.67 0.572029
Target:  5'- --aUCGUGCCcuucaUGCACgCCgaggagggCCGGCUGCAc -3'
miRNA:   3'- aagAGCGCGG-----ACGUG-GG--------GGCCGACGU- -5'
14172 5' -63.8 NC_003521.1 + 193244 0.67 0.572029
Target:  5'- ----aGCGCCUgggGUACCCCggauacgguCGGCUGCGg -3'
miRNA:   3'- aagagCGCGGA---CGUGGGG---------GCCGACGU- -5'
14172 5' -63.8 NC_003521.1 + 26259 0.67 0.572029
Target:  5'- -cCUCGCcCCUGCugCUCa-GCUGCAc -3'
miRNA:   3'- aaGAGCGcGGACGugGGGgcCGACGU- -5'
14172 5' -63.8 NC_003521.1 + 145646 0.67 0.562549
Target:  5'- gUUC-CGCGCCgagcgcgagGUGCCCUCGGCccGCGa -3'
miRNA:   3'- -AAGaGCGCGGa--------CGUGGGGGCCGa-CGU- -5'
14172 5' -63.8 NC_003521.1 + 32877 0.67 0.562549
Target:  5'- gUUUgGCGCCcGCGCCgCCGGUgcUGCc -3'
miRNA:   3'- aAGAgCGCGGaCGUGGgGGCCG--ACGu -5'
14172 5' -63.8 NC_003521.1 + 206236 0.67 0.562549
Target:  5'- aUCUgcgCGCGCCUGCAgCCC-GGCgucagccuggUGCAc -3'
miRNA:   3'- aAGA---GCGCGGACGUgGGGgCCG----------ACGU- -5'
14172 5' -63.8 NC_003521.1 + 7742 0.67 0.553112
Target:  5'- --aUUGCGCCUGgAUCgCCGGaCUGCu -3'
miRNA:   3'- aagAGCGCGGACgUGGgGGCC-GACGu -5'
14172 5' -63.8 NC_003521.1 + 154486 0.67 0.553112
Target:  5'- -gCUCGCugcacgGCCU-CACCaCCCGGCUGaCGu -3'
miRNA:   3'- aaGAGCG------CGGAcGUGG-GGGCCGAC-GU- -5'
14172 5' -63.8 NC_003521.1 + 80990 0.67 0.55217
Target:  5'- -gCUCGCGCCUccgcgcaGCGCCUCaCGGCcgGUc -3'
miRNA:   3'- aaGAGCGCGGA-------CGUGGGG-GCCGa-CGu -5'
14172 5' -63.8 NC_003521.1 + 32906 0.67 0.543722
Target:  5'- ---cCGUGCCcGcCGCCCCCGGCguaggugGCGc -3'
miRNA:   3'- aagaGCGCGGaC-GUGGGGGCCGa------CGU- -5'
14172 5' -63.8 NC_003521.1 + 106242 0.67 0.543722
Target:  5'- gUCUCcauccucaGCCUGCACCCCuaccuggaCGaGCUGCGc -3'
miRNA:   3'- aAGAGcg------CGGACGUGGGG--------GC-CGACGU- -5'
14172 5' -63.8 NC_003521.1 + 164581 0.68 0.538113
Target:  5'- cUCUCGCGCCucacgcucgaggacgUGCGCgCCCagGGCgUGCc -3'
miRNA:   3'- aAGAGCGCGG---------------ACGUG-GGGg-CCG-ACGu -5'
14172 5' -63.8 NC_003521.1 + 114316 0.68 0.534385
Target:  5'- uUUCUCGCGCUacucgGCcaccuGCCCCaaCGuGCUGCAc -3'
miRNA:   3'- -AAGAGCGCGGa----CG-----UGGGG--GC-CGACGU- -5'
14172 5' -63.8 NC_003521.1 + 37289 0.68 0.534385
Target:  5'- aUCUUGUGacacagCUGCGCCUCCGuCUGCAc -3'
miRNA:   3'- aAGAGCGCg-----GACGUGGGGGCcGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.