Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14172 | 5' | -63.8 | NC_003521.1 | + | 207568 | 0.66 | 0.619882 |
Target: 5'- --aUCGCGCCggccugcuggcgUGUGCCagcucaacgCCGGCUGCAa -3' miRNA: 3'- aagAGCGCGG------------ACGUGGg--------GGCCGACGU- -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 106242 | 0.67 | 0.543722 |
Target: 5'- gUCUCcauccucaGCCUGCACCCCuaccuggaCGaGCUGCGc -3' miRNA: 3'- aAGAGcg------CGGACGUGGGG--------GC-CGACGU- -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 105829 | 0.67 | 0.591097 |
Target: 5'- ---aCGCcacgGCCUGC-CCCugcuaCCGGCUGCAc -3' miRNA: 3'- aagaGCG----CGGACGuGGG-----GGCCGACGU- -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 206236 | 0.67 | 0.562549 |
Target: 5'- aUCUgcgCGCGCCUGCAgCCC-GGCgucagccuggUGCAc -3' miRNA: 3'- aAGA---GCGCGGACGUgGGGgCCG----------ACGU- -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 210371 | 0.67 | 0.591097 |
Target: 5'- ---gCGCGUCaucgGCACCCUCGGCcGCc -3' miRNA: 3'- aagaGCGCGGa---CGUGGGGGCCGaCGu -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 7742 | 0.67 | 0.553112 |
Target: 5'- --aUUGCGCCUGgAUCgCCGGaCUGCu -3' miRNA: 3'- aagAGCGCGGACgUGGgGGCC-GACGu -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 148785 | 0.67 | 0.591097 |
Target: 5'- --gUCGCGCCgaGgAgCCgCGGCUGCGg -3' miRNA: 3'- aagAGCGCGGa-CgUgGGgGCCGACGU- -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 90184 | 0.67 | 0.572029 |
Target: 5'- cUUCgUCGCGCa--CGCCCCCGcCUGCGc -3' miRNA: 3'- -AAG-AGCGCGgacGUGGGGGCcGACGU- -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 80990 | 0.67 | 0.55217 |
Target: 5'- -gCUCGCGCCUccgcgcaGCGCCUCaCGGCcgGUc -3' miRNA: 3'- aaGAGCGCGGA-------CGUGGGG-GCCGa-CGu -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 154486 | 0.67 | 0.553112 |
Target: 5'- -gCUCGCugcacgGCCU-CACCaCCCGGCUGaCGu -3' miRNA: 3'- aaGAGCG------CGGAcGUGG-GGGCCGAC-GU- -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 26259 | 0.67 | 0.572029 |
Target: 5'- -cCUCGCcCCUGCugCUCa-GCUGCAc -3' miRNA: 3'- aaGAGCGcGGACGugGGGgcCGACGU- -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 32906 | 0.67 | 0.543722 |
Target: 5'- ---cCGUGCCcGcCGCCCCCGGCguaggugGCGc -3' miRNA: 3'- aagaGCGCGGaC-GUGGGGGCCGa------CGU- -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 32877 | 0.67 | 0.562549 |
Target: 5'- gUUUgGCGCCcGCGCCgCCGGUgcUGCc -3' miRNA: 3'- aAGAgCGCGGaCGUGGgGGCCG--ACGu -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 145646 | 0.67 | 0.562549 |
Target: 5'- gUUC-CGCGCCgagcgcgagGUGCCCUCGGCccGCGa -3' miRNA: 3'- -AAGaGCGCGGa--------CGUGGGGGCCGa-CGU- -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 193244 | 0.67 | 0.572029 |
Target: 5'- ----aGCGCCUgggGUACCCCggauacgguCGGCUGCGg -3' miRNA: 3'- aagagCGCGGA---CGUGGGG---------GCCGACGU- -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 75239 | 0.67 | 0.572029 |
Target: 5'- --aUCGUGCCcuucaUGCACgCCgaggagggCCGGCUGCAc -3' miRNA: 3'- aagAGCGCGG-----ACGUG-GG--------GGCCGACGU- -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 226059 | 0.67 | 0.572029 |
Target: 5'- -cCUCG-GCCacgaagGCGCgCCCCGGCcGCGg -3' miRNA: 3'- aaGAGCgCGGa-----CGUG-GGGGCCGaCGU- -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 132319 | 0.68 | 0.515888 |
Target: 5'- aUCUCcCGCgUGCGCCUgCGGgUGCu -3' miRNA: 3'- aAGAGcGCGgACGUGGGgGCCgACGu -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 91101 | 0.68 | 0.515888 |
Target: 5'- gUCU-GCGCCUGCGCcggucggggauuCCCCGGCa--- -3' miRNA: 3'- aAGAgCGCGGACGUG------------GGGGCCGacgu -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 32606 | 0.68 | 0.506736 |
Target: 5'- cUCUgGUGUCUGUACCUgCGacuGCUGCAg -3' miRNA: 3'- aAGAgCGCGGACGUGGGgGC---CGACGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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