Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14172 | 5' | -63.8 | NC_003521.1 | + | 138448 | 0.68 | 0.479715 |
Target: 5'- gUCccCGCGCgUGCAUCgCCGGCgGCGc -3' miRNA: 3'- aAGa-GCGCGgACGUGGgGGCCGaCGU- -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 135168 | 0.68 | 0.479715 |
Target: 5'- --aUCGUGCCgccCACCCCCGaGCUGg- -3' miRNA: 3'- aagAGCGCGGac-GUGGGGGC-CGACgu -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 179247 | 0.68 | 0.488646 |
Target: 5'- cUUCUgGCGCCUGaACUCgCCGGCcaGCAg -3' miRNA: 3'- -AAGAgCGCGGACgUGGG-GGCCGa-CGU- -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 172555 | 0.68 | 0.488646 |
Target: 5'- aUCUCGUGCC-GCugUCCCGGggucgGCGg -3' miRNA: 3'- aAGAGCGCGGaCGugGGGGCCga---CGU- -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 163142 | 0.68 | 0.497654 |
Target: 5'- gUCuUCGCcaGCgUGC-CCCCCGGcCUGCu -3' miRNA: 3'- aAG-AGCG--CGgACGuGGGGGCC-GACGu -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 32606 | 0.68 | 0.506736 |
Target: 5'- cUCUgGUGUCUGUACCUgCGacuGCUGCAg -3' miRNA: 3'- aAGAgCGCGGACGUGGGgGC---CGACGU- -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 6680 | 0.68 | 0.515888 |
Target: 5'- -gCUCGUgcugcaggGCCUGCGCCCgCGagcGCUGCu -3' miRNA: 3'- aaGAGCG--------CGGACGUGGGgGC---CGACGu -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 91101 | 0.68 | 0.515888 |
Target: 5'- gUCU-GCGCCUGCGCcggucggggauuCCCCGGCa--- -3' miRNA: 3'- aAGAgCGCGGACGUG------------GGGGCCGacgu -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 132319 | 0.68 | 0.515888 |
Target: 5'- aUCUCcCGCgUGCGCCUgCGGgUGCu -3' miRNA: 3'- aAGAGcGCGgACGUGGGgGCCgACGu -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 74321 | 0.68 | 0.525106 |
Target: 5'- cUCuUCGguCGCCUGCACCCUCaGCaccUGCAc -3' miRNA: 3'- aAG-AGC--GCGGACGUGGGGGcCG---ACGU- -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 33762 | 0.68 | 0.525106 |
Target: 5'- gUCUCcuGC-CCUGCaacGCCUCCGGcCUGCGg -3' miRNA: 3'- aAGAG--CGcGGACG---UGGGGGCC-GACGU- -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 37289 | 0.68 | 0.534385 |
Target: 5'- aUCUUGUGacacagCUGCGCCUCCGuCUGCAc -3' miRNA: 3'- aAGAGCGCg-----GACGUGGGGGCcGACGU- -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 114316 | 0.68 | 0.534385 |
Target: 5'- uUUCUCGCGCUacucgGCcaccuGCCCCaaCGuGCUGCAc -3' miRNA: 3'- -AAGAGCGCGGa----CG-----UGGGG--GC-CGACGU- -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 164581 | 0.68 | 0.538113 |
Target: 5'- cUCUCGCGCCucacgcucgaggacgUGCGCgCCCagGGCgUGCc -3' miRNA: 3'- aAGAGCGCGG---------------ACGUG-GGGg-CCG-ACGu -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 32906 | 0.67 | 0.543722 |
Target: 5'- ---cCGUGCCcGcCGCCCCCGGCguaggugGCGc -3' miRNA: 3'- aagaGCGCGGaC-GUGGGGGCCGa------CGU- -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 106242 | 0.67 | 0.543722 |
Target: 5'- gUCUCcauccucaGCCUGCACCCCuaccuggaCGaGCUGCGc -3' miRNA: 3'- aAGAGcg------CGGACGUGGGG--------GC-CGACGU- -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 80990 | 0.67 | 0.55217 |
Target: 5'- -gCUCGCGCCUccgcgcaGCGCCUCaCGGCcgGUc -3' miRNA: 3'- aaGAGCGCGGA-------CGUGGGG-GCCGa-CGu -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 7742 | 0.67 | 0.553112 |
Target: 5'- --aUUGCGCCUGgAUCgCCGGaCUGCu -3' miRNA: 3'- aagAGCGCGGACgUGGgGGCC-GACGu -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 154486 | 0.67 | 0.553112 |
Target: 5'- -gCUCGCugcacgGCCU-CACCaCCCGGCUGaCGu -3' miRNA: 3'- aaGAGCG------CGGAcGUGG-GGGCCGAC-GU- -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 32877 | 0.67 | 0.562549 |
Target: 5'- gUUUgGCGCCcGCGCCgCCGGUgcUGCc -3' miRNA: 3'- aAGAgCGCGGaCGUGGgGGCCG--ACGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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