miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14172 5' -63.8 NC_003521.1 + 92975 1.05 0.001512
Target:  5'- cUUCUCGCGCCUGCACCCCCGGCUGCAc -3'
miRNA:   3'- -AAGAGCGCGGACGUGGGGGCCGACGU- -5'
14172 5' -63.8 NC_003521.1 + 232393 0.75 0.186749
Target:  5'- gUCUCGCGCuggCUGCGCCUgCGGCacgGCAa -3'
miRNA:   3'- aAGAGCGCG---GACGUGGGgGCCGa--CGU- -5'
14172 5' -63.8 NC_003521.1 + 223837 0.71 0.342201
Target:  5'- ----gGCGCCUGCugUCCCugcGGCUGCu -3'
miRNA:   3'- aagagCGCGGACGugGGGG---CCGACGu -5'
14172 5' -63.8 NC_003521.1 + 145180 0.71 0.348731
Target:  5'- -aUUCGUGCCUGaACCCgccgugaCCGGCUGCu -3'
miRNA:   3'- aaGAGCGCGGACgUGGG-------GGCCGACGu -5'
14172 5' -63.8 NC_003521.1 + 170544 0.71 0.371896
Target:  5'- uUUCUCuucgGCGCCgaccUGCGCCugCCCGuGCUGCAc -3'
miRNA:   3'- -AAGAG----CGCGG----ACGUGG--GGGC-CGACGU- -5'
14172 5' -63.8 NC_003521.1 + 25383 0.71 0.371896
Target:  5'- -cCUgGCGCCaGCACCCgCGGCUcuGCu -3'
miRNA:   3'- aaGAgCGCGGaCGUGGGgGCCGA--CGu -5'
14172 5' -63.8 NC_003521.1 + 207266 0.7 0.379589
Target:  5'- cUUCUCGUGCCUGCGUCaggCCGGCcGCc -3'
miRNA:   3'- -AAGAGCGCGGACGUGGg--GGCCGaCGu -5'
14172 5' -63.8 NC_003521.1 + 196748 0.7 0.395292
Target:  5'- ----gGCGCCUGCACcgucugcugCCCCGGCcgGCGc -3'
miRNA:   3'- aagagCGCGGACGUG---------GGGGCCGa-CGU- -5'
14172 5' -63.8 NC_003521.1 + 226932 0.7 0.395292
Target:  5'- cUC-CGCGCCggGC-CCCCCGGCgaaauccaugGCGg -3'
miRNA:   3'- aAGaGCGCGGa-CGuGGGGGCCGa---------CGU- -5'
14172 5' -63.8 NC_003521.1 + 160736 0.7 0.403299
Target:  5'- --gUCGCGCCgucgGCACCCCCGaugaGCAg -3'
miRNA:   3'- aagAGCGCGGa---CGUGGGGGCcga-CGU- -5'
14172 5' -63.8 NC_003521.1 + 64945 0.7 0.411408
Target:  5'- cUUCaUCGuCGCUggGCACCuCUCGGCUGCu -3'
miRNA:   3'- -AAG-AGC-GCGGa-CGUGG-GGGCCGACGu -5'
14172 5' -63.8 NC_003521.1 + 138467 0.7 0.419617
Target:  5'- cUUCUUcaagaGCGCCUGCcgccaCCCCGGCgucgGCGc -3'
miRNA:   3'- -AAGAG-----CGCGGACGug---GGGGCCGa---CGU- -5'
14172 5' -63.8 NC_003521.1 + 156615 0.7 0.419617
Target:  5'- cUCUCGCGCCUGgugcugcgcgaCGCCCUgGGCUu-- -3'
miRNA:   3'- aAGAGCGCGGAC-----------GUGGGGgCCGAcgu -5'
14172 5' -63.8 NC_003521.1 + 137683 0.69 0.427925
Target:  5'- ---aCGCGCCUGCugCCCCugGGCUc-- -3'
miRNA:   3'- aagaGCGCGGACGugGGGG--CCGAcgu -5'
14172 5' -63.8 NC_003521.1 + 39834 0.69 0.444828
Target:  5'- --aUgGCGCCUGCuugGCCUCCGGCgugggGCu -3'
miRNA:   3'- aagAgCGCGGACG---UGGGGGCCGa----CGu -5'
14172 5' -63.8 NC_003521.1 + 237379 0.69 0.444828
Target:  5'- ----aGCaGCCUGUGCCCUCGGCgucgGCAu -3'
miRNA:   3'- aagagCG-CGGACGUGGGGGCCGa---CGU- -5'
14172 5' -63.8 NC_003521.1 + 240061 0.69 0.444828
Target:  5'- --aUgGCGCCUGCuugGCCUCCGGCgugggGCu -3'
miRNA:   3'- aagAgCGCGGACG---UGGGGGCCGa----CGu -5'
14172 5' -63.8 NC_003521.1 + 2311 0.69 0.453419
Target:  5'- cUCUCGCaCCUGCugcgcgccgGCCUCCuggGGCUGCu -3'
miRNA:   3'- aAGAGCGcGGACG---------UGGGGG---CCGACGu -5'
14172 5' -63.8 NC_003521.1 + 202539 0.69 0.453419
Target:  5'- cUCUCGCaCCUGCugcgcgccgGCCUCCuggGGCUGCu -3'
miRNA:   3'- aAGAGCGcGGACG---------UGGGGG---CCGACGu -5'
14172 5' -63.8 NC_003521.1 + 143928 0.69 0.469985
Target:  5'- ---gCGCGCC-GCAUCCCCaacugcucgcaccGGCUGCGc -3'
miRNA:   3'- aagaGCGCGGaCGUGGGGG-------------CCGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.