miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14172 5' -63.8 NC_003521.1 + 226059 0.67 0.572029
Target:  5'- -cCUCG-GCCacgaagGCGCgCCCCGGCcGCGg -3'
miRNA:   3'- aaGAGCgCGGa-----CGUG-GGGGCCGaCGU- -5'
14172 5' -63.8 NC_003521.1 + 132319 0.68 0.515888
Target:  5'- aUCUCcCGCgUGCGCCUgCGGgUGCu -3'
miRNA:   3'- aAGAGcGCGgACGUGGGgGCCgACGu -5'
14172 5' -63.8 NC_003521.1 + 74321 0.68 0.525106
Target:  5'- cUCuUCGguCGCCUGCACCCUCaGCaccUGCAc -3'
miRNA:   3'- aAG-AGC--GCGGACGUGGGGGcCG---ACGU- -5'
14172 5' -63.8 NC_003521.1 + 32906 0.67 0.543722
Target:  5'- ---cCGUGCCcGcCGCCCCCGGCguaggugGCGc -3'
miRNA:   3'- aagaGCGCGGaC-GUGGGGGCCGa------CGU- -5'
14172 5' -63.8 NC_003521.1 + 7742 0.67 0.553112
Target:  5'- --aUUGCGCCUGgAUCgCCGGaCUGCu -3'
miRNA:   3'- aagAGCGCGGACgUGGgGGCC-GACGu -5'
14172 5' -63.8 NC_003521.1 + 32877 0.67 0.562549
Target:  5'- gUUUgGCGCCcGCGCCgCCGGUgcUGCc -3'
miRNA:   3'- aAGAgCGCGGaCGUGGgGGCCG--ACGu -5'
14172 5' -63.8 NC_003521.1 + 145646 0.67 0.562549
Target:  5'- gUUC-CGCGCCgagcgcgagGUGCCCUCGGCccGCGa -3'
miRNA:   3'- -AAGaGCGCGGa--------CGUGGGGGCCGa-CGU- -5'
14172 5' -63.8 NC_003521.1 + 193244 0.67 0.572029
Target:  5'- ----aGCGCCUgggGUACCCCggauacgguCGGCUGCGg -3'
miRNA:   3'- aagagCGCGGA---CGUGGGG---------GCCGACGU- -5'
14172 5' -63.8 NC_003521.1 + 75239 0.67 0.572029
Target:  5'- --aUCGUGCCcuucaUGCACgCCgaggagggCCGGCUGCAc -3'
miRNA:   3'- aagAGCGCGG-----ACGUG-GG--------GGCCGACGU- -5'
14172 5' -63.8 NC_003521.1 + 91101 0.68 0.515888
Target:  5'- gUCU-GCGCCUGCGCcggucggggauuCCCCGGCa--- -3'
miRNA:   3'- aAGAgCGCGGACGUG------------GGGGCCGacgu -5'
14172 5' -63.8 NC_003521.1 + 32606 0.68 0.506736
Target:  5'- cUCUgGUGUCUGUACCUgCGacuGCUGCAg -3'
miRNA:   3'- aAGAgCGCGGACGUGGGgGC---CGACGU- -5'
14172 5' -63.8 NC_003521.1 + 179247 0.68 0.488646
Target:  5'- cUUCUgGCGCCUGaACUCgCCGGCcaGCAg -3'
miRNA:   3'- -AAGAgCGCGGACgUGGG-GGCCGa-CGU- -5'
14172 5' -63.8 NC_003521.1 + 223837 0.71 0.342201
Target:  5'- ----gGCGCCUGCugUCCCugcGGCUGCu -3'
miRNA:   3'- aagagCGCGGACGugGGGG---CCGACGu -5'
14172 5' -63.8 NC_003521.1 + 196748 0.7 0.395292
Target:  5'- ----gGCGCCUGCACcgucugcugCCCCGGCcgGCGc -3'
miRNA:   3'- aagagCGCGGACGUG---------GGGGCCGa-CGU- -5'
14172 5' -63.8 NC_003521.1 + 226932 0.7 0.395292
Target:  5'- cUC-CGCGCCggGC-CCCCCGGCgaaauccaugGCGg -3'
miRNA:   3'- aAGaGCGCGGa-CGuGGGGGCCGa---------CGU- -5'
14172 5' -63.8 NC_003521.1 + 156615 0.7 0.419617
Target:  5'- cUCUCGCGCCUGgugcugcgcgaCGCCCUgGGCUu-- -3'
miRNA:   3'- aAGAGCGCGGAC-----------GUGGGGgCCGAcgu -5'
14172 5' -63.8 NC_003521.1 + 240061 0.69 0.444828
Target:  5'- --aUgGCGCCUGCuugGCCUCCGGCgugggGCu -3'
miRNA:   3'- aagAgCGCGGACG---UGGGGGCCGa----CGu -5'
14172 5' -63.8 NC_003521.1 + 202539 0.69 0.453419
Target:  5'- cUCUCGCaCCUGCugcgcgccgGCCUCCuggGGCUGCu -3'
miRNA:   3'- aAGAGCGcGGACG---------UGGGGG---CCGACGu -5'
14172 5' -63.8 NC_003521.1 + 143928 0.69 0.469985
Target:  5'- ---gCGCGCC-GCAUCCCCaacugcucgcaccGGCUGCGc -3'
miRNA:   3'- aagaGCGCGGaCGUGGGGG-------------CCGACGU- -5'
14172 5' -63.8 NC_003521.1 + 138448 0.68 0.479715
Target:  5'- gUCccCGCGCgUGCAUCgCCGGCgGCGc -3'
miRNA:   3'- aAGa-GCGCGgACGUGGgGGCCGaCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.