miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14172 5' -63.8 NC_003521.1 + 2311 0.69 0.453419
Target:  5'- cUCUCGCaCCUGCugcgcgccgGCCUCCuggGGCUGCu -3'
miRNA:   3'- aAGAGCGcGGACG---------UGGGGG---CCGACGu -5'
14172 5' -63.8 NC_003521.1 + 5140 0.66 0.648739
Target:  5'- gUCUCuuGCUgGCAUCuCUCGGCUGCu -3'
miRNA:   3'- aAGAGcgCGGaCGUGG-GGGCCGACGu -5'
14172 5' -63.8 NC_003521.1 + 6680 0.68 0.515888
Target:  5'- -gCUCGUgcugcaggGCCUGCGCCCgCGagcGCUGCu -3'
miRNA:   3'- aaGAGCG--------CGGACGUGGGgGC---CGACGu -5'
14172 5' -63.8 NC_003521.1 + 7742 0.67 0.553112
Target:  5'- --aUUGCGCCUGgAUCgCCGGaCUGCu -3'
miRNA:   3'- aagAGCGCGGACgUGGgGGCC-GACGu -5'
14172 5' -63.8 NC_003521.1 + 13934 0.66 0.639123
Target:  5'- -gCUgGcCGCCgugGUGCCCCCGcaGCUGCc -3'
miRNA:   3'- aaGAgC-GCGGa--CGUGGGGGC--CGACGu -5'
14172 5' -63.8 NC_003521.1 + 18185 0.66 0.648739
Target:  5'- -gCUgCGCGCCUGCcgGCCCUucgaucacauguCGGCcGCGg -3'
miRNA:   3'- aaGA-GCGCGGACG--UGGGG------------GCCGaCGU- -5'
14172 5' -63.8 NC_003521.1 + 25383 0.71 0.371896
Target:  5'- -cCUgGCGCCaGCACCCgCGGCUcuGCu -3'
miRNA:   3'- aaGAgCGCGGaCGUGGGgGCCGA--CGu -5'
14172 5' -63.8 NC_003521.1 + 26259 0.67 0.572029
Target:  5'- -cCUCGCcCCUGCugCUCa-GCUGCAc -3'
miRNA:   3'- aaGAGCGcGGACGugGGGgcCGACGU- -5'
14172 5' -63.8 NC_003521.1 + 32606 0.68 0.506736
Target:  5'- cUCUgGUGUCUGUACCUgCGacuGCUGCAg -3'
miRNA:   3'- aAGAgCGCGGACGUGGGgGC---CGACGU- -5'
14172 5' -63.8 NC_003521.1 + 32877 0.67 0.562549
Target:  5'- gUUUgGCGCCcGCGCCgCCGGUgcUGCc -3'
miRNA:   3'- aAGAgCGCGGaCGUGGgGGCCG--ACGu -5'
14172 5' -63.8 NC_003521.1 + 32906 0.67 0.543722
Target:  5'- ---cCGUGCCcGcCGCCCCCGGCguaggugGCGc -3'
miRNA:   3'- aagaGCGCGGaC-GUGGGGGCCGa------CGU- -5'
14172 5' -63.8 NC_003521.1 + 33762 0.68 0.525106
Target:  5'- gUCUCcuGC-CCUGCaacGCCUCCGGcCUGCGg -3'
miRNA:   3'- aAGAG--CGcGGACG---UGGGGGCC-GACGU- -5'
14172 5' -63.8 NC_003521.1 + 37289 0.68 0.534385
Target:  5'- aUCUUGUGacacagCUGCGCCUCCGuCUGCAc -3'
miRNA:   3'- aAGAGCGCg-----GACGUGGGGGCcGACGU- -5'
14172 5' -63.8 NC_003521.1 + 39834 0.69 0.444828
Target:  5'- --aUgGCGCCUGCuugGCCUCCGGCgugggGCu -3'
miRNA:   3'- aagAgCGCGGACG---UGGGGGCCGa----CGu -5'
14172 5' -63.8 NC_003521.1 + 41869 0.66 0.639123
Target:  5'- cUCUCGCGCCUGgugcccaACCUCCa-CUGCc -3'
miRNA:   3'- aAGAGCGCGGACg------UGGGGGccGACGu -5'
14172 5' -63.8 NC_003521.1 + 64945 0.7 0.411408
Target:  5'- cUUCaUCGuCGCUggGCACCuCUCGGCUGCu -3'
miRNA:   3'- -AAG-AGC-GCGGa-CGUGG-GGGCCGACGu -5'
14172 5' -63.8 NC_003521.1 + 65718 0.66 0.629501
Target:  5'- ----gGCGCCgcgGCGgCCCUGGCcgGCAa -3'
miRNA:   3'- aagagCGCGGa--CGUgGGGGCCGa-CGU- -5'
14172 5' -63.8 NC_003521.1 + 70714 0.66 0.61027
Target:  5'- gUCg-GCGCCUGCGCCggauguaCCGGCacuucguccagcUGCAg -3'
miRNA:   3'- aAGagCGCGGACGUGGg------GGCCG------------ACGU- -5'
14172 5' -63.8 NC_003521.1 + 74321 0.68 0.525106
Target:  5'- cUCuUCGguCGCCUGCACCCUCaGCaccUGCAc -3'
miRNA:   3'- aAG-AGC--GCGGACGUGGGGGcCG---ACGU- -5'
14172 5' -63.8 NC_003521.1 + 75026 0.66 0.619882
Target:  5'- gUCUCGCgcaucGCCUGCACCUCgugCGaGgaGCAc -3'
miRNA:   3'- aAGAGCG-----CGGACGUGGGG---GC-CgaCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.