miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14172 5' -63.8 NC_003521.1 + 240061 0.69 0.444828
Target:  5'- --aUgGCGCCUGCuugGCCUCCGGCgugggGCu -3'
miRNA:   3'- aagAgCGCGGACG---UGGGGGCCGa----CGu -5'
14172 5' -63.8 NC_003521.1 + 237379 0.69 0.444828
Target:  5'- ----aGCaGCCUGUGCCCUCGGCgucgGCAu -3'
miRNA:   3'- aagagCG-CGGACGUGGGGGCCGa---CGU- -5'
14172 5' -63.8 NC_003521.1 + 232393 0.75 0.186749
Target:  5'- gUCUCGCGCuggCUGCGCCUgCGGCacgGCAa -3'
miRNA:   3'- aAGAGCGCG---GACGUGGGgGCCGa--CGU- -5'
14172 5' -63.8 NC_003521.1 + 226932 0.7 0.395292
Target:  5'- cUC-CGCGCCggGC-CCCCCGGCgaaauccaugGCGg -3'
miRNA:   3'- aAGaGCGCGGa-CGuGGGGGCCGa---------CGU- -5'
14172 5' -63.8 NC_003521.1 + 226059 0.67 0.572029
Target:  5'- -cCUCG-GCCacgaagGCGCgCCCCGGCcGCGg -3'
miRNA:   3'- aaGAGCgCGGa-----CGUG-GGGGCCGaCGU- -5'
14172 5' -63.8 NC_003521.1 + 223837 0.71 0.342201
Target:  5'- ----gGCGCCUGCugUCCCugcGGCUGCu -3'
miRNA:   3'- aagagCGCGGACGugGGGG---CCGACGu -5'
14172 5' -63.8 NC_003521.1 + 213444 0.66 0.61027
Target:  5'- aUCccCGUgGCCUGgC-CCCCCGGCUGgAg -3'
miRNA:   3'- aAGa-GCG-CGGAC-GuGGGGGCCGACgU- -5'
14172 5' -63.8 NC_003521.1 + 210371 0.67 0.591097
Target:  5'- ---gCGCGUCaucgGCACCCUCGGCcGCc -3'
miRNA:   3'- aagaGCGCGGa---CGUGGGGGCCGaCGu -5'
14172 5' -63.8 NC_003521.1 + 207568 0.66 0.619882
Target:  5'- --aUCGCGCCggccugcuggcgUGUGCCagcucaacgCCGGCUGCAa -3'
miRNA:   3'- aagAGCGCGG------------ACGUGGg--------GGCCGACGU- -5'
14172 5' -63.8 NC_003521.1 + 207266 0.7 0.379589
Target:  5'- cUUCUCGUGCCUGCGUCaggCCGGCcGCc -3'
miRNA:   3'- -AAGAGCGCGGACGUGGg--GGCCGaCGu -5'
14172 5' -63.8 NC_003521.1 + 206236 0.67 0.562549
Target:  5'- aUCUgcgCGCGCCUGCAgCCC-GGCgucagccuggUGCAc -3'
miRNA:   3'- aAGA---GCGCGGACGUgGGGgCCG----------ACGU- -5'
14172 5' -63.8 NC_003521.1 + 202539 0.69 0.453419
Target:  5'- cUCUCGCaCCUGCugcgcgccgGCCUCCuggGGCUGCu -3'
miRNA:   3'- aAGAGCGcGGACG---------UGGGGG---CCGACGu -5'
14172 5' -63.8 NC_003521.1 + 198029 0.66 0.61027
Target:  5'- ----gGCGCgUGCAgCCgCCgGGCUGCAc -3'
miRNA:   3'- aagagCGCGgACGU-GG-GGgCCGACGU- -5'
14172 5' -63.8 NC_003521.1 + 196748 0.7 0.395292
Target:  5'- ----gGCGCCUGCACcgucugcugCCCCGGCcgGCGc -3'
miRNA:   3'- aagagCGCGGACGUG---------GGGGCCGa-CGU- -5'
14172 5' -63.8 NC_003521.1 + 193244 0.67 0.572029
Target:  5'- ----aGCGCCUgggGUACCCCggauacgguCGGCUGCGg -3'
miRNA:   3'- aagagCGCGGA---CGUGGGG---------GCCGACGU- -5'
14172 5' -63.8 NC_003521.1 + 179247 0.68 0.488646
Target:  5'- cUUCUgGCGCCUGaACUCgCCGGCcaGCAg -3'
miRNA:   3'- -AAGAgCGCGGACgUGGG-GGCCGa-CGU- -5'
14172 5' -63.8 NC_003521.1 + 176444 0.66 0.629501
Target:  5'- gUUCUgcagaCGCGCCcGCACCUCgGGCaUGUc -3'
miRNA:   3'- -AAGA-----GCGCGGaCGUGGGGgCCG-ACGu -5'
14172 5' -63.8 NC_003521.1 + 172555 0.68 0.488646
Target:  5'- aUCUCGUGCC-GCugUCCCGGggucgGCGg -3'
miRNA:   3'- aAGAGCGCGGaCGugGGGGCCga---CGU- -5'
14172 5' -63.8 NC_003521.1 + 170544 0.71 0.371896
Target:  5'- uUUCUCuucgGCGCCgaccUGCGCCugCCCGuGCUGCAc -3'
miRNA:   3'- -AAGAG----CGCGG----ACGUGG--GGGC-CGACGU- -5'
14172 5' -63.8 NC_003521.1 + 164581 0.68 0.538113
Target:  5'- cUCUCGCGCCucacgcucgaggacgUGCGCgCCCagGGCgUGCc -3'
miRNA:   3'- aAGAGCGCGG---------------ACGUG-GGGg-CCG-ACGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.