miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14172 5' -63.8 NC_003521.1 + 75239 0.67 0.572029
Target:  5'- --aUCGUGCCcuucaUGCACgCCgaggagggCCGGCUGCAc -3'
miRNA:   3'- aagAGCGCGG-----ACGUG-GG--------GGCCGACGU- -5'
14172 5' -63.8 NC_003521.1 + 80044 0.66 0.639123
Target:  5'- ---cCGCGCCcGCguGCCgCCGGCgGCAc -3'
miRNA:   3'- aagaGCGCGGaCG--UGGgGGCCGaCGU- -5'
14172 5' -63.8 NC_003521.1 + 80380 0.66 0.639123
Target:  5'- cUCUgcCGUGCCgucGCGCCUUCGGCguucUGCGg -3'
miRNA:   3'- aAGA--GCGCGGa--CGUGGGGGCCG----ACGU- -5'
14172 5' -63.8 NC_003521.1 + 80990 0.67 0.55217
Target:  5'- -gCUCGCGCCUccgcgcaGCGCCUCaCGGCcgGUc -3'
miRNA:   3'- aaGAGCGCGGA-------CGUGGGG-GCCGa-CGu -5'
14172 5' -63.8 NC_003521.1 + 90184 0.67 0.572029
Target:  5'- cUUCgUCGCGCa--CGCCCCCGcCUGCGc -3'
miRNA:   3'- -AAG-AGCGCGgacGUGGGGGCcGACGU- -5'
14172 5' -63.8 NC_003521.1 + 91101 0.68 0.515888
Target:  5'- gUCU-GCGCCUGCGCcggucggggauuCCCCGGCa--- -3'
miRNA:   3'- aAGAgCGCGGACGUG------------GGGGCCGacgu -5'
14172 5' -63.8 NC_003521.1 + 92975 1.05 0.001512
Target:  5'- cUUCUCGCGCCUGCACCCCCGGCUGCAc -3'
miRNA:   3'- -AAGAGCGCGGACGUGGGGGCCGACGU- -5'
14172 5' -63.8 NC_003521.1 + 103258 0.66 0.639123
Target:  5'- -gUUCGCGCgUGCACUgcugCUCGGCcgGCGc -3'
miRNA:   3'- aaGAGCGCGgACGUGG----GGGCCGa-CGU- -5'
14172 5' -63.8 NC_003521.1 + 105829 0.67 0.591097
Target:  5'- ---aCGCcacgGCCUGC-CCCugcuaCCGGCUGCAc -3'
miRNA:   3'- aagaGCG----CGGACGuGGG-----GGCCGACGU- -5'
14172 5' -63.8 NC_003521.1 + 106242 0.67 0.543722
Target:  5'- gUCUCcauccucaGCCUGCACCCCuaccuggaCGaGCUGCGc -3'
miRNA:   3'- aAGAGcg------CGGACGUGGGG--------GC-CGACGU- -5'
14172 5' -63.8 NC_003521.1 + 114316 0.68 0.534385
Target:  5'- uUUCUCGCGCUacucgGCcaccuGCCCCaaCGuGCUGCAc -3'
miRNA:   3'- -AAGAGCGCGGa----CG-----UGGGG--GC-CGACGU- -5'
14172 5' -63.8 NC_003521.1 + 116419 0.66 0.600673
Target:  5'- aUCUCGCGgCUGuCGgCCCUGuuugucauGCUGCGa -3'
miRNA:   3'- aAGAGCGCgGAC-GUgGGGGC--------CGACGU- -5'
14172 5' -63.8 NC_003521.1 + 120917 0.66 0.600673
Target:  5'- -gCUUGCGUUUGCggcuGCCCgCGGCgGCGg -3'
miRNA:   3'- aaGAGCGCGGACG----UGGGgGCCGaCGU- -5'
14172 5' -63.8 NC_003521.1 + 124179 0.66 0.619882
Target:  5'- ----aGCGCCugUGCGCCUgCCGGCUGgGg -3'
miRNA:   3'- aagagCGCGG--ACGUGGG-GGCCGACgU- -5'
14172 5' -63.8 NC_003521.1 + 127128 0.66 0.619882
Target:  5'- ---gCGCGUCgUGCACCUCCaGGCgGCGc -3'
miRNA:   3'- aagaGCGCGG-ACGUGGGGG-CCGaCGU- -5'
14172 5' -63.8 NC_003521.1 + 129398 0.66 0.600673
Target:  5'- -gCUUGCGCUUGC-CCgCCCGcUUGCAg -3'
miRNA:   3'- aaGAGCGCGGACGuGG-GGGCcGACGU- -5'
14172 5' -63.8 NC_003521.1 + 131475 0.66 0.619882
Target:  5'- -cCUCGUcgGCCUcCugCgCCGGCUGCu -3'
miRNA:   3'- aaGAGCG--CGGAcGugGgGGCCGACGu -5'
14172 5' -63.8 NC_003521.1 + 132319 0.68 0.515888
Target:  5'- aUCUCcCGCgUGCGCCUgCGGgUGCu -3'
miRNA:   3'- aAGAGcGCGgACGUGGGgGCCgACGu -5'
14172 5' -63.8 NC_003521.1 + 135168 0.68 0.479715
Target:  5'- --aUCGUGCCgccCACCCCCGaGCUGg- -3'
miRNA:   3'- aagAGCGCGGac-GUGGGGGC-CGACgu -5'
14172 5' -63.8 NC_003521.1 + 137683 0.69 0.427925
Target:  5'- ---aCGCGCCUGCugCCCCugGGCUc-- -3'
miRNA:   3'- aagaGCGCGGACGugGGGG--CCGAcgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.