Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14172 | 5' | -63.8 | NC_003521.1 | + | 92975 | 1.05 | 0.001512 |
Target: 5'- cUUCUCGCGCCUGCACCCCCGGCUGCAc -3' miRNA: 3'- -AAGAGCGCGGACGUGGGGGCCGACGU- -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 114316 | 0.68 | 0.534385 |
Target: 5'- uUUCUCGCGCUacucgGCcaccuGCCCCaaCGuGCUGCAc -3' miRNA: 3'- -AAGAGCGCGGa----CG-----UGGGG--GC-CGACGU- -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 164581 | 0.68 | 0.538113 |
Target: 5'- cUCUCGCGCCucacgcucgaggacgUGCGCgCCCagGGCgUGCc -3' miRNA: 3'- aAGAGCGCGG---------------ACGUG-GGGg-CCG-ACGu -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 18185 | 0.66 | 0.648739 |
Target: 5'- -gCUgCGCGCCUGCcgGCCCUucgaucacauguCGGCcGCGg -3' miRNA: 3'- aaGA-GCGCGGACG--UGGGG------------GCCGaCGU- -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 207266 | 0.7 | 0.379589 |
Target: 5'- cUUCUCGUGCCUGCGUCaggCCGGCcGCc -3' miRNA: 3'- -AAGAGCGCGGACGUGGg--GGCCGaCGu -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 160736 | 0.7 | 0.403299 |
Target: 5'- --gUCGCGCCgucgGCACCCCCGaugaGCAg -3' miRNA: 3'- aagAGCGCGGa---CGUGGGGGCcga-CGU- -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 138467 | 0.7 | 0.419617 |
Target: 5'- cUUCUUcaagaGCGCCUGCcgccaCCCCGGCgucgGCGc -3' miRNA: 3'- -AAGAG-----CGCGGACGug---GGGGCCGa---CGU- -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 137683 | 0.69 | 0.427925 |
Target: 5'- ---aCGCGCCUGCugCCCCugGGCUc-- -3' miRNA: 3'- aagaGCGCGGACGugGGGG--CCGAcgu -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 2311 | 0.69 | 0.453419 |
Target: 5'- cUCUCGCaCCUGCugcgcgccgGCCUCCuggGGCUGCu -3' miRNA: 3'- aAGAGCGcGGACG---------UGGGGG---CCGACGu -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 33762 | 0.68 | 0.525106 |
Target: 5'- gUCUCcuGC-CCUGCaacGCCUCCGGcCUGCGg -3' miRNA: 3'- aAGAG--CGcGGACG---UGGGGGCC-GACGU- -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 172555 | 0.68 | 0.488646 |
Target: 5'- aUCUCGUGCC-GCugUCCCGGggucgGCGg -3' miRNA: 3'- aAGAGCGCGGaCGugGGGGCCga---CGU- -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 39834 | 0.69 | 0.444828 |
Target: 5'- --aUgGCGCCUGCuugGCCUCCGGCgugggGCu -3' miRNA: 3'- aagAgCGCGGACG---UGGGGGCCGa----CGu -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 145180 | 0.71 | 0.348731 |
Target: 5'- -aUUCGUGCCUGaACCCgccgugaCCGGCUGCu -3' miRNA: 3'- aaGAGCGCGGACgUGGG-------GGCCGACGu -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 163142 | 0.68 | 0.497654 |
Target: 5'- gUCuUCGCcaGCgUGC-CCCCCGGcCUGCu -3' miRNA: 3'- aAG-AGCG--CGgACGuGGGGGCC-GACGu -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 25383 | 0.71 | 0.371896 |
Target: 5'- -cCUgGCGCCaGCACCCgCGGCUcuGCu -3' miRNA: 3'- aaGAgCGCGGaCGUGGGgGCCGA--CGu -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 237379 | 0.69 | 0.444828 |
Target: 5'- ----aGCaGCCUGUGCCCUCGGCgucgGCAu -3' miRNA: 3'- aagagCG-CGGACGUGGGGGCCGa---CGU- -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 6680 | 0.68 | 0.515888 |
Target: 5'- -gCUCGUgcugcaggGCCUGCGCCCgCGagcGCUGCu -3' miRNA: 3'- aaGAGCG--------CGGACGUGGGgGC---CGACGu -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 37289 | 0.68 | 0.534385 |
Target: 5'- aUCUUGUGacacagCUGCGCCUCCGuCUGCAc -3' miRNA: 3'- aAGAGCGCg-----GACGUGGGGGCcGACGU- -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 170544 | 0.71 | 0.371896 |
Target: 5'- uUUCUCuucgGCGCCgaccUGCGCCugCCCGuGCUGCAc -3' miRNA: 3'- -AAGAG----CGCGG----ACGUGG--GGGC-CGACGU- -5' |
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14172 | 5' | -63.8 | NC_003521.1 | + | 64945 | 0.7 | 0.411408 |
Target: 5'- cUUCaUCGuCGCUggGCACCuCUCGGCUGCu -3' miRNA: 3'- -AAG-AGC-GCGGa-CGUGG-GGGCCGACGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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