miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14178 5' -56.4 NC_003521.1 + 22436 0.72 0.688699
Target:  5'- cCGAGUACCGC-CCGcGCUucacGCgGCACGc -3'
miRNA:   3'- -GCUCAUGGCGcGGCuUGA----CGaCGUGC- -5'
14178 5' -56.4 NC_003521.1 + 145643 0.72 0.688699
Target:  5'- gGAGUuCCGCGCCGAGC-GCgagGUGCc -3'
miRNA:   3'- gCUCAuGGCGCGGCUUGaCGa--CGUGc -5'
14178 5' -56.4 NC_003521.1 + 74088 0.72 0.688699
Target:  5'- -uGGUGCUG-GCCGAcaUGCUGCGCGa -3'
miRNA:   3'- gcUCAUGGCgCGGCUugACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 39460 0.72 0.698418
Target:  5'- cCGAGgGCCGCGUCGAaggAUUGCggaucgGCGCa -3'
miRNA:   3'- -GCUCaUGGCGCGGCU---UGACGa-----CGUGc -5'
14178 5' -56.4 NC_003521.1 + 144929 0.72 0.705192
Target:  5'- gGAGUucaugucgcgcgucGCCGCGCUGGcucGCgacgaaggGCUGCGCGa -3'
miRNA:   3'- gCUCA--------------UGGCGCGGCU---UGa-------CGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 15653 0.72 0.708086
Target:  5'- uCGAGcgGCagcacaGCGCCGAGgUGgUGCGCGa -3'
miRNA:   3'- -GCUCa-UGg-----CGCGGCUUgACgACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 43152 0.72 0.708086
Target:  5'- -aGGUGCaCGCGCUGGuggcGCUGCUgccGCACGa -3'
miRNA:   3'- gcUCAUG-GCGCGGCU----UGACGA---CGUGC- -5'
14178 5' -56.4 NC_003521.1 + 145941 0.72 0.708086
Target:  5'- aCGAGaACaCGC-CCGAGCUGCUGgGCc -3'
miRNA:   3'- -GCUCaUG-GCGcGGCUUGACGACgUGc -5'
14178 5' -56.4 NC_003521.1 + 29417 0.72 0.717694
Target:  5'- aCGAug--UGCGCCG-GCUGCUGCACGa -3'
miRNA:   3'- -GCUcaugGCGCGGCuUGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 103809 0.72 0.717694
Target:  5'- gCGAGaugACCGUGCgGAACaggugGCUGUACa -3'
miRNA:   3'- -GCUCa--UGGCGCGgCUUGa----CGACGUGc -5'
14178 5' -56.4 NC_003521.1 + 177739 0.72 0.727234
Target:  5'- gCGGGcAgCGCGCCGGcGCaGCUGUACGg -3'
miRNA:   3'- -GCUCaUgGCGCGGCU-UGaCGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 163727 0.71 0.736698
Target:  5'- gCGAGUGCCgcgaccccauGCGCCGca-UGCUGCuCGa -3'
miRNA:   3'- -GCUCAUGG----------CGCGGCuugACGACGuGC- -5'
14178 5' -56.4 NC_003521.1 + 144028 0.71 0.736698
Target:  5'- gCGAucGUGCCcguaGCGCCGccGCUGCUGCcgGCGg -3'
miRNA:   3'- -GCU--CAUGG----CGCGGCu-UGACGACG--UGC- -5'
14178 5' -56.4 NC_003521.1 + 86256 0.71 0.736698
Target:  5'- uGAGaAUCGCGCUGAGgUuCUGCGCGg -3'
miRNA:   3'- gCUCaUGGCGCGGCUUgAcGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 102249 0.71 0.736698
Target:  5'- gCGAGaUGCCGCGacaCGAcauGCUGCUG-ACGa -3'
miRNA:   3'- -GCUC-AUGGCGCg--GCU---UGACGACgUGC- -5'
14178 5' -56.4 NC_003521.1 + 137172 0.71 0.736698
Target:  5'- cCGcAGcgGCCGcCGCCGAGCUGCccccGCugGa -3'
miRNA:   3'- -GC-UCa-UGGC-GCGGCUUGACGa---CGugC- -5'
14178 5' -56.4 NC_003521.1 + 210568 0.71 0.749803
Target:  5'- aGGGUcagcuggccacggcaACCGCGCgGAcCUGCaGCGCGa -3'
miRNA:   3'- gCUCA---------------UGGCGCGgCUuGACGaCGUGC- -5'
14178 5' -56.4 NC_003521.1 + 195392 0.71 0.755363
Target:  5'- gCGAGgccaugACCGCGCCGA-CgGCggGCACc -3'
miRNA:   3'- -GCUCa-----UGGCGCGGCUuGaCGa-CGUGc -5'
14178 5' -56.4 NC_003521.1 + 137302 0.71 0.764549
Target:  5'- gCGGGUGgCGCG----GCUGCUGCGCGg -3'
miRNA:   3'- -GCUCAUgGCGCggcuUGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 185274 0.71 0.770914
Target:  5'- gCGAGUGCUacuuccccucgucgGCGCgGcGCUcGCUGCGCGu -3'
miRNA:   3'- -GCUCAUGG--------------CGCGgCuUGA-CGACGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.