miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14178 5' -56.4 NC_003521.1 + 88679 1.1 0.004172
Target:  5'- gCGAGUACCGCGCCGAACUGCUGCACGg -3'
miRNA:   3'- -GCUCAUGGCGCGGCUUGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 26983 0.81 0.288137
Target:  5'- gCGAG-ACUGgGCCGAACUGCUGCGa- -3'
miRNA:   3'- -GCUCaUGGCgCGGCUUGACGACGUgc -5'
14178 5' -56.4 NC_003521.1 + 161707 0.78 0.38223
Target:  5'- gCGAGUACgGCGacaCCGAGCgGUUGCGCGa -3'
miRNA:   3'- -GCUCAUGgCGC---GGCUUGaCGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 103069 0.77 0.423484
Target:  5'- gCGGGUGCgCGgGCgaGGGCUGCUGCugGg -3'
miRNA:   3'- -GCUCAUG-GCgCGg-CUUGACGACGugC- -5'
14178 5' -56.4 NC_003521.1 + 196657 0.77 0.43205
Target:  5'- gGAGUACCgacgGCGCC-AGCUGCUGCuCGa -3'
miRNA:   3'- gCUCAUGG----CGCGGcUUGACGACGuGC- -5'
14178 5' -56.4 NC_003521.1 + 205898 0.77 0.45834
Target:  5'- aCGAGgguCUGCGCCGcuacCUGCUGCGCu -3'
miRNA:   3'- -GCUCau-GGCGCGGCuu--GACGACGUGc -5'
14178 5' -56.4 NC_003521.1 + 185209 0.76 0.494671
Target:  5'- gGuGUggGCCGCGCgGGACUGCgUGUACGa -3'
miRNA:   3'- gCuCA--UGGCGCGgCUUGACG-ACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 129907 0.76 0.494671
Target:  5'- aCGGGgcgGCCGCGCgc--CUGCUGCGCGa -3'
miRNA:   3'- -GCUCa--UGGCGCGgcuuGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 40831 0.76 0.503959
Target:  5'- gCGGGgcCCGCGCCauGGACaccuUGCUGCACa -3'
miRNA:   3'- -GCUCauGGCGCGG--CUUG----ACGACGUGc -5'
14178 5' -56.4 NC_003521.1 + 166800 0.74 0.590362
Target:  5'- aCGA-UGCCGcCGCCGcuGCUGCUGCgACGa -3'
miRNA:   3'- -GCUcAUGGC-GCGGCu-UGACGACG-UGC- -5'
14178 5' -56.4 NC_003521.1 + 193381 0.74 0.619874
Target:  5'- gGAGUGCgGCGCCcGGCUGCaUGUGCc -3'
miRNA:   3'- gCUCAUGgCGCGGcUUGACG-ACGUGc -5'
14178 5' -56.4 NC_003521.1 + 90840 0.74 0.619874
Target:  5'- gCGGGUG-CGCGCCGcccguGCUGCUGCugaccACGg -3'
miRNA:   3'- -GCUCAUgGCGCGGCu----UGACGACG-----UGC- -5'
14178 5' -56.4 NC_003521.1 + 103458 0.73 0.646506
Target:  5'- -cGGUugCGCGCCacggcguaggcgacGAACUGCgGCACGc -3'
miRNA:   3'- gcUCAugGCGCGG--------------CUUGACGaCGUGC- -5'
14178 5' -56.4 NC_003521.1 + 129820 0.73 0.649463
Target:  5'- -uGGUGCUGgGCCGc-CUGCUGCugGg -3'
miRNA:   3'- gcUCAUGGCgCGGCuuGACGACGugC- -5'
14178 5' -56.4 NC_003521.1 + 34571 0.73 0.658326
Target:  5'- gGGGUgcaccagGCUGaCGCCGGGCUGCagGCGCGc -3'
miRNA:   3'- gCUCA-------UGGC-GCGGCUUGACGa-CGUGC- -5'
14178 5' -56.4 NC_003521.1 + 109749 0.73 0.669137
Target:  5'- aGGGUcACCGCaaacugGCCcAGCUGCUGCAUGc -3'
miRNA:   3'- gCUCA-UGGCG------CGGcUUGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 31393 0.73 0.669137
Target:  5'- -uGGUGCUuCGCCGuACUGCUGUGCGu -3'
miRNA:   3'- gcUCAUGGcGCGGCuUGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 185104 0.73 0.678936
Target:  5'- gGAGgcgcugCGCGCCGAcauGCUGgaGCACGg -3'
miRNA:   3'- gCUCaug---GCGCGGCU---UGACgaCGUGC- -5'
14178 5' -56.4 NC_003521.1 + 235287 0.72 0.685774
Target:  5'- gCGGcgGCCGCGCCGGcugccgucaccgucGCUGCUGCuACu -3'
miRNA:   3'- -GCUcaUGGCGCGGCU--------------UGACGACG-UGc -5'
14178 5' -56.4 NC_003521.1 + 74088 0.72 0.688699
Target:  5'- -uGGUGCUG-GCCGAcaUGCUGCGCGa -3'
miRNA:   3'- gcUCAUGGCgCGGCUugACGACGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.