miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14178 5' -56.4 NC_003521.1 + 2074 0.67 0.936249
Target:  5'- uCGAGcuCCGCcggcCCGAcuuCUGCUGCugGa -3'
miRNA:   3'- -GCUCauGGCGc---GGCUu--GACGACGugC- -5'
14178 5' -56.4 NC_003521.1 + 7015 0.69 0.864026
Target:  5'- --cGUACuUGgGCUGGcGCUGCUGCACGu -3'
miRNA:   3'- gcuCAUG-GCgCGGCU-UGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 15653 0.72 0.708086
Target:  5'- uCGAGcgGCagcacaGCGCCGAGgUGgUGCGCGa -3'
miRNA:   3'- -GCUCa-UGg-----CGCGGCUUgACgACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 15797 0.68 0.89788
Target:  5'- aCGAcGUgaucuGCUGCGCCGAGCggcucaucgUGCUGgGCa -3'
miRNA:   3'- -GCU-CA-----UGGCGCGGCUUG---------ACGACgUGc -5'
14178 5' -56.4 NC_003521.1 + 16510 0.66 0.945221
Target:  5'- aCGGGcUGCgGCGCuCGGcucgGCUGgaGCGCa -3'
miRNA:   3'- -GCUC-AUGgCGCG-GCU----UGACgaCGUGc -5'
14178 5' -56.4 NC_003521.1 + 16999 0.66 0.949379
Target:  5'- -cAGUAUCGacaGCagGAGCUGCUGCAa- -3'
miRNA:   3'- gcUCAUGGCg--CGg-CUUGACGACGUgc -5'
14178 5' -56.4 NC_003521.1 + 18454 0.69 0.864026
Target:  5'- --uGUGCCGCuUCGAccGCggGCUGCGCGg -3'
miRNA:   3'- gcuCAUGGCGcGGCU--UGa-CGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 18753 0.66 0.945221
Target:  5'- -cGGUG--GCGCCGAcgggucGCUGCUGCgACGg -3'
miRNA:   3'- gcUCAUggCGCGGCU------UGACGACG-UGC- -5'
14178 5' -56.4 NC_003521.1 + 18853 0.69 0.849093
Target:  5'- aCGAGUGCgGCGUgGAGCUGUcgUGUcaGCu -3'
miRNA:   3'- -GCUCAUGgCGCGgCUUGACG--ACG--UGc -5'
14178 5' -56.4 NC_003521.1 + 21374 0.67 0.940845
Target:  5'- --cGUGCCGCaGCUGAcCgaGCUGUGCGa -3'
miRNA:   3'- gcuCAUGGCG-CGGCUuGa-CGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 22394 0.7 0.815415
Target:  5'- cCGuGGUGCCGcCGCUGucgcuggccaUGCUGCGCGg -3'
miRNA:   3'- -GC-UCAUGGC-GCGGCuug-------ACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 22436 0.72 0.688699
Target:  5'- cCGAGUACCGC-CCGcGCUucacGCgGCACGc -3'
miRNA:   3'- -GCUCAUGGCGcGGCuUGA----CGaCGUGC- -5'
14178 5' -56.4 NC_003521.1 + 26148 0.66 0.960574
Target:  5'- -uGGUcuuCCGCGUcuaCGGACUGCUGCuGCu -3'
miRNA:   3'- gcUCAu--GGCGCG---GCUUGACGACG-UGc -5'
14178 5' -56.4 NC_003521.1 + 26983 0.81 0.288137
Target:  5'- gCGAG-ACUGgGCCGAACUGCUGCGa- -3'
miRNA:   3'- -GCUCaUGGCgCGGCUUGACGACGUgc -5'
14178 5' -56.4 NC_003521.1 + 28579 0.67 0.926392
Target:  5'- cCGAcUACgCGgaCGgCGGGCUGCUGCGCa -3'
miRNA:   3'- -GCUcAUG-GC--GCgGCUUGACGACGUGc -5'
14178 5' -56.4 NC_003521.1 + 28830 0.67 0.915648
Target:  5'- gCGuGUcuGCgGCGCCuggacgacGAGCUGCggcgGCGCGg -3'
miRNA:   3'- -GCuCA--UGgCGCGG--------CUUGACGa---CGUGC- -5'
14178 5' -56.4 NC_003521.1 + 29260 0.66 0.945221
Target:  5'- gCGAgcGUGCgGCGCU--ACUgGCUGUACGg -3'
miRNA:   3'- -GCU--CAUGgCGCGGcuUGA-CGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 29417 0.72 0.717694
Target:  5'- aCGAug--UGCGCCG-GCUGCUGCACGa -3'
miRNA:   3'- -GCUcaugGCGCGGCuUGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 29463 0.66 0.953322
Target:  5'- uGAu--CCGCGaCCG-GCUGCUGCGgGa -3'
miRNA:   3'- gCUcauGGCGC-GGCuUGACGACGUgC- -5'
14178 5' -56.4 NC_003521.1 + 30894 0.71 0.782583
Target:  5'- aGAGgGCCGaGCUGAACUGCgGCAgGc -3'
miRNA:   3'- gCUCaUGGCgCGGCUUGACGaCGUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.