miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14178 5' -56.4 NC_003521.1 + 116351 0.71 0.773625
Target:  5'- aCGAccaGCCGCccgacgagGCCGAGCUGCUGCugccGCGc -3'
miRNA:   3'- -GCUca-UGGCG--------CGGCUUGACGACG----UGC- -5'
14178 5' -56.4 NC_003521.1 + 144929 0.72 0.705192
Target:  5'- gGAGUucaugucgcgcgucGCCGCGCUGGcucGCgacgaaggGCUGCGCGa -3'
miRNA:   3'- gCUCA--------------UGGCGCGGCU---UGa-------CGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 43152 0.72 0.708086
Target:  5'- -aGGUGCaCGCGCUGGuggcGCUGCUgccGCACGa -3'
miRNA:   3'- gcUCAUG-GCGCGGCU----UGACGA---CGUGC- -5'
14178 5' -56.4 NC_003521.1 + 145941 0.72 0.708086
Target:  5'- aCGAGaACaCGC-CCGAGCUGCUGgGCc -3'
miRNA:   3'- -GCUCaUG-GCGcGGCUUGACGACgUGc -5'
14178 5' -56.4 NC_003521.1 + 103809 0.72 0.717694
Target:  5'- gCGAGaugACCGUGCgGAACaggugGCUGUACa -3'
miRNA:   3'- -GCUCa--UGGCGCGgCUUGa----CGACGUGc -5'
14178 5' -56.4 NC_003521.1 + 137172 0.71 0.736698
Target:  5'- cCGcAGcgGCCGcCGCCGAGCUGCccccGCugGa -3'
miRNA:   3'- -GC-UCa-UGGC-GCGGCUUGACGa---CGugC- -5'
14178 5' -56.4 NC_003521.1 + 195392 0.71 0.755363
Target:  5'- gCGAGgccaugACCGCGCCGA-CgGCggGCACc -3'
miRNA:   3'- -GCUCa-----UGGCGCGGCUuGaCGa-CGUGc -5'
14178 5' -56.4 NC_003521.1 + 137302 0.71 0.764549
Target:  5'- gCGGGUGgCGCG----GCUGCUGCGCGg -3'
miRNA:   3'- -GCUCAUgGCGCggcuUGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 152341 0.71 0.773625
Target:  5'- uCGGGc-CCGCGCCGAcGCUGCU-CugGg -3'
miRNA:   3'- -GCUCauGGCGCGGCU-UGACGAcGugC- -5'
14178 5' -56.4 NC_003521.1 + 39460 0.72 0.698418
Target:  5'- cCGAGgGCCGCGUCGAaggAUUGCggaucgGCGCa -3'
miRNA:   3'- -GCUCaUGGCGCGGCU---UGACGa-----CGUGc -5'
14178 5' -56.4 NC_003521.1 + 145643 0.72 0.688699
Target:  5'- gGAGUuCCGCGCCGAGC-GCgagGUGCc -3'
miRNA:   3'- gCUCAuGGCGCGGCUUGaCGa--CGUGc -5'
14178 5' -56.4 NC_003521.1 + 74088 0.72 0.688699
Target:  5'- -uGGUGCUG-GCCGAcaUGCUGCGCGa -3'
miRNA:   3'- gcUCAUGGCgCGGCUugACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 196657 0.77 0.43205
Target:  5'- gGAGUACCgacgGCGCC-AGCUGCUGCuCGa -3'
miRNA:   3'- gCUCAUGG----CGCGGcUUGACGACGuGC- -5'
14178 5' -56.4 NC_003521.1 + 129907 0.76 0.494671
Target:  5'- aCGGGgcgGCCGCGCgc--CUGCUGCGCGa -3'
miRNA:   3'- -GCUCa--UGGCGCGgcuuGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 40831 0.76 0.503959
Target:  5'- gCGGGgcCCGCGCCauGGACaccuUGCUGCACa -3'
miRNA:   3'- -GCUCauGGCGCGG--CUUG----ACGACGUGc -5'
14178 5' -56.4 NC_003521.1 + 166800 0.74 0.590362
Target:  5'- aCGA-UGCCGcCGCCGcuGCUGCUGCgACGa -3'
miRNA:   3'- -GCUcAUGGC-GCGGCu-UGACGACG-UGC- -5'
14178 5' -56.4 NC_003521.1 + 103458 0.73 0.646506
Target:  5'- -cGGUugCGCGCCacggcguaggcgacGAACUGCgGCACGc -3'
miRNA:   3'- gcUCAugGCGCGG--------------CUUGACGaCGUGC- -5'
14178 5' -56.4 NC_003521.1 + 129820 0.73 0.649463
Target:  5'- -uGGUGCUGgGCCGc-CUGCUGCugGg -3'
miRNA:   3'- gcUCAUGGCgCGGCuuGACGACGugC- -5'
14178 5' -56.4 NC_003521.1 + 34571 0.73 0.658326
Target:  5'- gGGGUgcaccagGCUGaCGCCGGGCUGCagGCGCGc -3'
miRNA:   3'- gCUCA-------UGGC-GCGGCUUGACGa-CGUGC- -5'
14178 5' -56.4 NC_003521.1 + 109749 0.73 0.669137
Target:  5'- aGGGUcACCGCaaacugGCCcAGCUGCUGCAUGc -3'
miRNA:   3'- gCUCA-UGGCG------CGGcUUGACGACGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.