miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14178 5' -56.4 NC_003521.1 + 70691 0.66 0.945221
Target:  5'- aCGGcGU-CUGCGCCGcaAGCUGCgucgGCGCc -3'
miRNA:   3'- -GCU-CAuGGCGCGGC--UUGACGa---CGUGc -5'
14178 5' -56.4 NC_003521.1 + 98004 0.66 0.944793
Target:  5'- -uGGUGCCGaUGCCGAagcccagGCUGUUGcCACc -3'
miRNA:   3'- gcUCAUGGC-GCGGCU-------UGACGAC-GUGc -5'
14178 5' -56.4 NC_003521.1 + 145357 0.66 0.944793
Target:  5'- uCGAGUGCCacgugaugcacggGCG-CGAGCcGgUGCGCGa -3'
miRNA:   3'- -GCUCAUGG-------------CGCgGCUUGaCgACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 29463 0.66 0.953322
Target:  5'- uGAu--CCGCGaCCG-GCUGCUGCGgGa -3'
miRNA:   3'- gCUcauGGCGC-GGCuUGACGACGUgC- -5'
14178 5' -56.4 NC_003521.1 + 122232 0.66 0.945221
Target:  5'- gCGGGUGCCgGCGaCUGAGCgccgccacgucGCUGgGCGu -3'
miRNA:   3'- -GCUCAUGG-CGC-GGCUUGa----------CGACgUGC- -5'
14178 5' -56.4 NC_003521.1 + 120844 0.66 0.948973
Target:  5'- uCGGGUGCCaUGCUGGACUcggccuugaggcgGCcGCGCGu -3'
miRNA:   3'- -GCUCAUGGcGCGGCUUGA-------------CGaCGUGC- -5'
14178 5' -56.4 NC_003521.1 + 143919 0.66 0.956689
Target:  5'- aCGGGcACggCGCGCCGcauccccAACUGCUcGCACc -3'
miRNA:   3'- -GCUCaUG--GCGCGGC-------UUGACGA-CGUGc -5'
14178 5' -56.4 NC_003521.1 + 185727 0.66 0.944793
Target:  5'- cCGGGUGCgGaggugauCGCCGAGCgGgUGCGCc -3'
miRNA:   3'- -GCUCAUGgC-------GCGGCUUGaCgACGUGc -5'
14178 5' -56.4 NC_003521.1 + 87927 0.66 0.945221
Target:  5'- uGGccGCCGCGCCGGGCaUGCUcuuCAUGg -3'
miRNA:   3'- gCUcaUGGCGCGGCUUG-ACGAc--GUGC- -5'
14178 5' -56.4 NC_003521.1 + 18753 0.66 0.945221
Target:  5'- -cGGUG--GCGCCGAcgggucGCUGCUGCgACGg -3'
miRNA:   3'- gcUCAUggCGCGGCU------UGACGACG-UGC- -5'
14178 5' -56.4 NC_003521.1 + 53953 0.66 0.945221
Target:  5'- uGAGcuggGCCGacgaGCCG---UGCUGCACGc -3'
miRNA:   3'- gCUCa---UGGCg---CGGCuugACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 226185 0.66 0.953322
Target:  5'- aGGGccagaCGCaCUGcAGCUGCUGCACGg -3'
miRNA:   3'- gCUCaug--GCGcGGC-UUGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 29260 0.66 0.945221
Target:  5'- gCGAgcGUGCgGCGCU--ACUgGCUGUACGg -3'
miRNA:   3'- -GCU--CAUGgCGCGGcuUGA-CGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 46435 0.66 0.945221
Target:  5'- aGGGUAuCCG-GCgGGGCUGCggggGCugGu -3'
miRNA:   3'- gCUCAU-GGCgCGgCUUGACGa---CGugC- -5'
14178 5' -56.4 NC_003521.1 + 162625 0.66 0.957052
Target:  5'- aCGAGcGCCGCGCCc-GCU-CcGCACGc -3'
miRNA:   3'- -GCUCaUGGCGCGGcuUGAcGaCGUGC- -5'
14178 5' -56.4 NC_003521.1 + 16999 0.66 0.949379
Target:  5'- -cAGUAUCGacaGCagGAGCUGCUGCAa- -3'
miRNA:   3'- gcUCAUGGCg--CGg-CUUGACGACGUgc -5'
14178 5' -56.4 NC_003521.1 + 87016 0.66 0.960574
Target:  5'- aCGGG---CGUGCUGGGCacGCUGCGCGa -3'
miRNA:   3'- -GCUCaugGCGCGGCUUGa-CGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 100804 0.66 0.960231
Target:  5'- aGGGUcgccuggGCUGCGaCUGuGAUUGUUGCGCGg -3'
miRNA:   3'- gCUCA-------UGGCGC-GGC-UUGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 217395 0.66 0.945221
Target:  5'- uGGGcACCGCcagGCUGAGCgGCgGCAUGa -3'
miRNA:   3'- gCUCaUGGCG---CGGCUUGaCGaCGUGC- -5'
14178 5' -56.4 NC_003521.1 + 121282 0.66 0.945221
Target:  5'- ----cACgGCGCCGAggugguGCUGCgGCACa -3'
miRNA:   3'- gcucaUGgCGCGGCU------UGACGaCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.