miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14178 5' -56.4 NC_003521.1 + 31393 0.73 0.669137
Target:  5'- -uGGUGCUuCGCCGuACUGCUGUGCGu -3'
miRNA:   3'- gcUCAUGGcGCGGCuUGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 33574 0.67 0.926392
Target:  5'- gGAGUGCCGUaacgGCaCGGaagACUGUgaccGCACGg -3'
miRNA:   3'- gCUCAUGGCG----CG-GCU---UGACGa---CGUGC- -5'
14178 5' -56.4 NC_003521.1 + 34571 0.73 0.658326
Target:  5'- gGGGUgcaccagGCUGaCGCCGGGCUGCagGCGCGc -3'
miRNA:   3'- gCUCA-------UGGC-GCGGCUUGACGa-CGUGC- -5'
14178 5' -56.4 NC_003521.1 + 39021 0.67 0.921131
Target:  5'- gCGGGcGCCGcCGaaGGAUUGCUGgGCGu -3'
miRNA:   3'- -GCUCaUGGC-GCggCUUGACGACgUGC- -5'
14178 5' -56.4 NC_003521.1 + 39460 0.72 0.698418
Target:  5'- cCGAGgGCCGCGUCGAaggAUUGCggaucgGCGCa -3'
miRNA:   3'- -GCUCaUGGCGCGGCU---UGACGa-----CGUGc -5'
14178 5' -56.4 NC_003521.1 + 39894 0.67 0.926392
Target:  5'- aGGGUGuuG-GCCG-ACUGCgggaagGCGCGa -3'
miRNA:   3'- gCUCAUggCgCGGCuUGACGa-----CGUGC- -5'
14178 5' -56.4 NC_003521.1 + 40831 0.76 0.503959
Target:  5'- gCGGGgcCCGCGCCauGGACaccuUGCUGCACa -3'
miRNA:   3'- -GCUCauGGCGCGG--CUUG----ACGACGUGc -5'
14178 5' -56.4 NC_003521.1 + 42742 0.67 0.940845
Target:  5'- aGGGcACCgugcGCGCCGAgggcaagaaaaaGCUGCUGCuCa -3'
miRNA:   3'- gCUCaUGG----CGCGGCU------------UGACGACGuGc -5'
14178 5' -56.4 NC_003521.1 + 43152 0.72 0.708086
Target:  5'- -aGGUGCaCGCGCUGGuggcGCUGCUgccGCACGa -3'
miRNA:   3'- gcUCAUG-GCGCGGCU----UGACGA---CGUGC- -5'
14178 5' -56.4 NC_003521.1 + 44317 0.67 0.935777
Target:  5'- gGGGUGCUgaagcagGUGCUGGGCaaGCUGCACc -3'
miRNA:   3'- gCUCAUGG-------CGCGGCUUGa-CGACGUGc -5'
14178 5' -56.4 NC_003521.1 + 45046 0.68 0.904021
Target:  5'- uCGAGaGCCGCGCCGcucguGCcagGCaacGCGCGu -3'
miRNA:   3'- -GCUCaUGGCGCGGCu----UGa--CGa--CGUGC- -5'
14178 5' -56.4 NC_003521.1 + 46435 0.66 0.945221
Target:  5'- aGGGUAuCCG-GCgGGGCUGCggggGCugGu -3'
miRNA:   3'- gCUCAU-GGCgCGgCUUGACGa---CGugC- -5'
14178 5' -56.4 NC_003521.1 + 49116 0.68 0.891525
Target:  5'- gCGuGgugACCGCGgCGccGCUGCUGCGgGg -3'
miRNA:   3'- -GCuCa--UGGCGCgGCu-UGACGACGUgC- -5'
14178 5' -56.4 NC_003521.1 + 50233 0.68 0.878183
Target:  5'- gGAGuUACCGCugGCUgguGAACUGCUGC-Ca -3'
miRNA:   3'- gCUC-AUGGCG--CGG---CUUGACGACGuGc -5'
14178 5' -56.4 NC_003521.1 + 52362 0.67 0.936249
Target:  5'- uGAG-ACCuCgGCUGAGCUGgUGCACa -3'
miRNA:   3'- gCUCaUGGcG-CGGCUUGACgACGUGc -5'
14178 5' -56.4 NC_003521.1 + 53750 0.68 0.891525
Target:  5'- cCGAGaACCGCGCCcuccGCUcGCUGgCACc -3'
miRNA:   3'- -GCUCaUGGCGCGGcu--UGA-CGAC-GUGc -5'
14178 5' -56.4 NC_003521.1 + 53953 0.66 0.945221
Target:  5'- uGAGcuggGCCGacgaGCCG---UGCUGCACGc -3'
miRNA:   3'- gCUCa---UGGCg---CGGCuugACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 54228 0.69 0.871204
Target:  5'- -cAGUACCGacuGCCGGGCgGCUGCuACc -3'
miRNA:   3'- gcUCAUGGCg--CGGCUUGaCGACG-UGc -5'
14178 5' -56.4 NC_003521.1 + 55539 0.67 0.939489
Target:  5'- gCGAGcGCCGCGCCGAcgaggggaaguagcACUcGCgGUugaGCGg -3'
miRNA:   3'- -GCUCaUGGCGCGGCU--------------UGA-CGaCG---UGC- -5'
14178 5' -56.4 NC_003521.1 + 56144 0.68 0.878183
Target:  5'- gCGAGUGCggcuCGUGCUGcucGCUGC-GCGCGa -3'
miRNA:   3'- -GCUCAUG----GCGCGGCu--UGACGaCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.