miRNA display CGI


Results 21 - 40 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14179 3' -51.9 NC_003521.1 + 26164 0.67 0.990854
Target:  5'- --cGGA-CUGCU-GCUGCUGGAgACGg -3'
miRNA:   3'- ucuUCUaGACGGuCGACGACUUgUGC- -5'
14179 3' -51.9 NC_003521.1 + 56771 0.67 0.992
Target:  5'- cAGAAcg-CcGuCCAGCUGCUGuGCGCGa -3'
miRNA:   3'- -UCUUcuaGaC-GGUCGACGACuUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 116303 0.67 0.989174
Target:  5'- uGGAGGAcagcuccaugCUGCUcgucaagugccaagAGCUGCUG-ACGCGg -3'
miRNA:   3'- -UCUUCUa---------GACGG--------------UCGACGACuUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 100801 0.67 0.989582
Target:  5'- aAGAGGGUC-GCCugGGCUGCgacugUGAuuguuGCGCGg -3'
miRNA:   3'- -UCUUCUAGaCGG--UCGACG-----ACU-----UGUGC- -5'
14179 3' -51.9 NC_003521.1 + 168513 0.67 0.988176
Target:  5'- cGGAGGAcggCgacGCCAGCagGCUGGcggccaGCGCGg -3'
miRNA:   3'- -UCUUCUa--Ga--CGGUCGa-CGACU------UGUGC- -5'
14179 3' -51.9 NC_003521.1 + 74635 0.67 0.986627
Target:  5'- aAGGAGuUCUGCCuGCgucacggGCUGAACc-- -3'
miRNA:   3'- -UCUUCuAGACGGuCGa------CGACUUGugc -5'
14179 3' -51.9 NC_003521.1 + 101461 0.67 0.992
Target:  5'- cGgcGcUCUucGCCAGCUGCUacAACACGa -3'
miRNA:   3'- uCuuCuAGA--CGGUCGACGAc-UUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 161888 0.67 0.992
Target:  5'- cAGaAAGAUCgGCgAGUaccUGCUGgAGCGCGg -3'
miRNA:   3'- -UC-UUCUAGaCGgUCG---ACGAC-UUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 29690 0.67 0.987265
Target:  5'- uGGAGGAugauccgcugcguccUCggcGCCuGGCUGCUGAgccucgGCGCGa -3'
miRNA:   3'- -UCUUCU---------------AGa--CGG-UCGACGACU------UGUGC- -5'
14179 3' -51.9 NC_003521.1 + 122117 0.67 0.986627
Target:  5'- cAGcGGcGUCUcGCC-GCgGCUGAACACGg -3'
miRNA:   3'- -UCuUC-UAGA-CGGuCGaCGACUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 59363 0.67 0.986627
Target:  5'- aGGcGGcgC-GCCAGCcGCUGGACGCc -3'
miRNA:   3'- -UCuUCuaGaCGGUCGaCGACUUGUGc -5'
14179 3' -51.9 NC_003521.1 + 129702 0.67 0.985966
Target:  5'- cGAGGAcgcccgcuUCUGCCGGCcGCggcccgucgacgcGAGCGCGu -3'
miRNA:   3'- uCUUCU--------AGACGGUCGaCGa------------CUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 145135 0.68 0.983068
Target:  5'- uGGAGcUCUuUCAGCUGCUGGagaaggagucGCGCGg -3'
miRNA:   3'- uCUUCuAGAcGGUCGACGACU----------UGUGC- -5'
14179 3' -51.9 NC_003521.1 + 179592 0.68 0.984928
Target:  5'- uGAAGuucugcaggCUGCC-GCUGCUGcuGCGCGu -3'
miRNA:   3'- uCUUCua-------GACGGuCGACGACu-UGUGC- -5'
14179 3' -51.9 NC_003521.1 + 76277 0.68 0.976199
Target:  5'- aGGAAGAgucgCUGCC-GCUGCUGcgaguccggguccGGCAgCGg -3'
miRNA:   3'- -UCUUCUa---GACGGuCGACGAC-------------UUGU-GC- -5'
14179 3' -51.9 NC_003521.1 + 144749 0.68 0.973868
Target:  5'- cGAGGAgCUGacCCGGCUGCUGGcgguCugGg -3'
miRNA:   3'- uCUUCUaGAC--GGUCGACGACUu---GugC- -5'
14179 3' -51.9 NC_003521.1 + 33225 0.68 0.973868
Target:  5'- cAGAcGGAUCUugcaGCCGGC-GUUGAGCugGc -3'
miRNA:   3'- -UCU-UCUAGA----CGGUCGaCGACUUGugC- -5'
14179 3' -51.9 NC_003521.1 + 111758 0.68 0.984928
Target:  5'- cGAGGGUCUgcGCCAGCU-CaGGGCGCc -3'
miRNA:   3'- uCUUCUAGA--CGGUCGAcGaCUUGUGc -5'
14179 3' -51.9 NC_003521.1 + 119763 0.68 0.978836
Target:  5'- uGAAGAUCUGCUcggccuccaGGCUGCgGucCACc -3'
miRNA:   3'- uCUUCUAGACGG---------UCGACGaCuuGUGc -5'
14179 3' -51.9 NC_003521.1 + 148450 0.68 0.98104
Target:  5'- cAGggGug--GCCGGUgcgUGCUGAugACGa -3'
miRNA:   3'- -UCuuCuagaCGGUCG---ACGACUugUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.