Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14179 | 3' | -51.9 | NC_003521.1 | + | 119235 | 0.66 | 0.993029 |
Target: 5'- cAGcuGGUgUGCUcGCUGgaGAACACGc -3' miRNA: 3'- -UCuuCUAgACGGuCGACgaCUUGUGC- -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 18728 | 0.66 | 0.99395 |
Target: 5'- -cGAGAcgCUGCCGGC-GCUGcAGgGCGg -3' miRNA: 3'- ucUUCUa-GACGGUCGaCGAC-UUgUGC- -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 198742 | 0.66 | 0.993029 |
Target: 5'- cAGAcgAGGUCuUGCCGuGCUcGCUGGuCGCGc -3' miRNA: 3'- -UCU--UCUAG-ACGGU-CGA-CGACUuGUGC- -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 155391 | 0.66 | 0.99477 |
Target: 5'- cGGAcGA-CgagGCCGGCgggggGCUGGGCACc -3' miRNA: 3'- -UCUuCUaGa--CGGUCGa----CGACUUGUGc -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 40802 | 0.66 | 0.993029 |
Target: 5'- -cAGGcUCUGCCAGC-GUUGAGuCACa -3' miRNA: 3'- ucUUCuAGACGGUCGaCGACUU-GUGc -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 84358 | 0.66 | 0.995072 |
Target: 5'- aAGGAGccgGUCUGCgAGCUGaucugacaguugggcUUGAGCACc -3' miRNA: 3'- -UCUUC---UAGACGgUCGAC---------------GACUUGUGc -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 211224 | 0.66 | 0.996141 |
Target: 5'- uGAAGGUCUugGUCAGCagGCUGuugggaauACACa -3' miRNA: 3'- uCUUCUAGA--CGGUCGa-CGACu-------UGUGc -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 213769 | 0.66 | 0.995498 |
Target: 5'- uAGAAGAUg-GCCAGC-GCguaGACGCGc -3' miRNA: 3'- -UCUUCUAgaCGGUCGaCGac-UUGUGC- -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 27214 | 0.66 | 0.99477 |
Target: 5'- aGGAAGGcgauggucuucuUCUGCUGGUcggGCgaGAGCACGg -3' miRNA: 3'- -UCUUCU------------AGACGGUCGa--CGa-CUUGUGC- -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 64010 | 0.66 | 0.99477 |
Target: 5'- uAGAGGAgCUGCaGGC-GCUGgAGCGCa -3' miRNA: 3'- -UCUUCUaGACGgUCGaCGAC-UUGUGc -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 15421 | 0.66 | 0.996141 |
Target: 5'- --cAGAUUUgaGCCGGgUGCgagGGACGCGg -3' miRNA: 3'- ucuUCUAGA--CGGUCgACGa--CUUGUGC- -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 138380 | 0.66 | 0.99395 |
Target: 5'- -cGAGAUCUGCCgcGGCcUGCg--GCGCGu -3' miRNA: 3'- ucUUCUAGACGG--UCG-ACGacuUGUGC- -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 480 | 0.66 | 0.993029 |
Target: 5'- -cAGGcUCUGCCAGC-GUUGAGuCACa -3' miRNA: 3'- ucUUCuAGACGGUCGaCGACUU-GUGc -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 86390 | 0.67 | 0.989582 |
Target: 5'- gGGAAGAaggGCCAGCggucgacGCgggGGACGCGc -3' miRNA: 3'- -UCUUCUagaCGGUCGa------CGa--CUUGUGC- -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 26164 | 0.67 | 0.990854 |
Target: 5'- --cGGA-CUGCU-GCUGCUGGAgACGg -3' miRNA: 3'- ucuUCUaGACGGuCGACGACUUgUGC- -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 100801 | 0.67 | 0.989582 |
Target: 5'- aAGAGGGUC-GCCugGGCUGCgacugUGAuuguuGCGCGg -3' miRNA: 3'- -UCUUCUAGaCGG--UCGACG-----ACU-----UGUGC- -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 80350 | 0.67 | 0.990854 |
Target: 5'- gGGAAGAgCUGCUccagcGGCUGCaUGuACAUGc -3' miRNA: 3'- -UCUUCUaGACGG-----UCGACG-ACuUGUGC- -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 144094 | 0.67 | 0.990854 |
Target: 5'- --uGGGcuUCUGCCucaugcGGCUGCUGGACcgccGCGg -3' miRNA: 3'- ucuUCU--AGACGG------UCGACGACUUG----UGC- -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 108818 | 0.67 | 0.987265 |
Target: 5'- aGGAacgGGAUCUgguacgaauugcgcaGCucCAGCUGCgUGAACACGc -3' miRNA: 3'- -UCU---UCUAGA---------------CG--GUCGACG-ACUUGUGC- -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 116303 | 0.67 | 0.989174 |
Target: 5'- uGGAGGAcagcuccaugCUGCUcgucaagugccaagAGCUGCUG-ACGCGg -3' miRNA: 3'- -UCUUCUa---------GACGG--------------UCGACGACuUGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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