miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14179 3' -51.9 NC_003521.1 + 480 0.66 0.993029
Target:  5'- -cAGGcUCUGCCAGC-GUUGAGuCACa -3'
miRNA:   3'- ucUUCuAGACGGUCGaCGACUU-GUGc -5'
14179 3' -51.9 NC_003521.1 + 8035 0.73 0.85171
Target:  5'- cGGAGGcgUUGagaaCCAGCUGCUGAGgGCa -3'
miRNA:   3'- -UCUUCuaGAC----GGUCGACGACUUgUGc -5'
14179 3' -51.9 NC_003521.1 + 15421 0.66 0.996141
Target:  5'- --cAGAUUUgaGCCGGgUGCgagGGACGCGg -3'
miRNA:   3'- ucuUCUAGA--CGGUCgACGa--CUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 18728 0.66 0.99395
Target:  5'- -cGAGAcgCUGCCGGC-GCUGcAGgGCGg -3'
miRNA:   3'- ucUUCUa-GACGGUCGaCGAC-UUgUGC- -5'
14179 3' -51.9 NC_003521.1 + 26164 0.67 0.990854
Target:  5'- --cGGA-CUGCU-GCUGCUGGAgACGg -3'
miRNA:   3'- ucuUCUaGACGGuCGACGACUUgUGC- -5'
14179 3' -51.9 NC_003521.1 + 27214 0.66 0.99477
Target:  5'- aGGAAGGcgauggucuucuUCUGCUGGUcggGCgaGAGCACGg -3'
miRNA:   3'- -UCUUCU------------AGACGGUCGa--CGa-CUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 29690 0.67 0.987265
Target:  5'- uGGAGGAugauccgcugcguccUCggcGCCuGGCUGCUGAgccucgGCGCGa -3'
miRNA:   3'- -UCUUCU---------------AGa--CGG-UCGACGACU------UGUGC- -5'
14179 3' -51.9 NC_003521.1 + 33225 0.68 0.973868
Target:  5'- cAGAcGGAUCUugcaGCCGGC-GUUGAGCugGc -3'
miRNA:   3'- -UCU-UCUAGA----CGGUCGaCGACUUGugC- -5'
14179 3' -51.9 NC_003521.1 + 34988 0.7 0.94282
Target:  5'- cAGAAGGUCUccgggGCCAGCgagcGCUugcgucgugcccggcGGACGCGg -3'
miRNA:   3'- -UCUUCUAGA-----CGGUCGa---CGA---------------CUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 40802 0.66 0.993029
Target:  5'- -cAGGcUCUGCCAGC-GUUGAGuCACa -3'
miRNA:   3'- ucUUCuAGACGGUCGaCGACUU-GUGc -5'
14179 3' -51.9 NC_003521.1 + 44716 0.67 0.986627
Target:  5'- cGGcGGAUCUauaccgcgcGCCGcauuucguGCUGCUGGACGCc -3'
miRNA:   3'- -UCuUCUAGA---------CGGU--------CGACGACUUGUGc -5'
14179 3' -51.9 NC_003521.1 + 48424 0.69 0.964905
Target:  5'- cGAGGcgCUggaacagcaccGUCAGCUGCUGAAguCGCGu -3'
miRNA:   3'- uCUUCuaGA-----------CGGUCGACGACUU--GUGC- -5'
14179 3' -51.9 NC_003521.1 + 56771 0.67 0.992
Target:  5'- cAGAAcg-CcGuCCAGCUGCUGuGCGCGa -3'
miRNA:   3'- -UCUUcuaGaC-GGUCGACGACuUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 58394 0.69 0.964905
Target:  5'- aGGggGAUCUGCCgcGGCcGCguGAUGCGg -3'
miRNA:   3'- -UCuuCUAGACGG--UCGaCGacUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 59363 0.67 0.986627
Target:  5'- aGGcGGcgC-GCCAGCcGCUGGACGCc -3'
miRNA:   3'- -UCuUCuaGaCGGUCGaCGACUUGUGc -5'
14179 3' -51.9 NC_003521.1 + 64010 0.66 0.99477
Target:  5'- uAGAGGAgCUGCaGGC-GCUGgAGCGCa -3'
miRNA:   3'- -UCUUCUaGACGgUCGaCGAC-UUGUGc -5'
14179 3' -51.9 NC_003521.1 + 64336 0.71 0.92577
Target:  5'- gAGcAGAUgaGCCAGCUGCaggcccUGGGCGCc -3'
miRNA:   3'- -UCuUCUAgaCGGUCGACG------ACUUGUGc -5'
14179 3' -51.9 NC_003521.1 + 67740 0.76 0.713975
Target:  5'- -cAAGAUCuucucgcaacagUGCCGGCUGCUGAACGa- -3'
miRNA:   3'- ucUUCUAG------------ACGGUCGACGACUUGUgc -5'
14179 3' -51.9 NC_003521.1 + 71138 0.7 0.953978
Target:  5'- --cAGAUCcGCguGCUGCUGAagaaucACACGc -3'
miRNA:   3'- ucuUCUAGaCGguCGACGACU------UGUGC- -5'
14179 3' -51.9 NC_003521.1 + 74635 0.67 0.986627
Target:  5'- aAGGAGuUCUGCCuGCgucacggGCUGAACc-- -3'
miRNA:   3'- -UCUUCuAGACGGuCGa------CGACUUGugc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.