miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14179 3' -51.9 NC_003521.1 + 129702 0.67 0.985966
Target:  5'- cGAGGAcgcccgcuUCUGCCGGCcGCggcccgucgacgcGAGCGCGu -3'
miRNA:   3'- uCUUCU--------AGACGGUCGaCGa------------CUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 144749 0.68 0.973868
Target:  5'- cGAGGAgCUGacCCGGCUGCUGGcgguCugGg -3'
miRNA:   3'- uCUUCUaGAC--GGUCGACGACUu---GugC- -5'
14179 3' -51.9 NC_003521.1 + 33225 0.68 0.973868
Target:  5'- cAGAcGGAUCUugcaGCCGGC-GUUGAGCugGc -3'
miRNA:   3'- -UCU-UCUAGA----CGGUCGaCGACUUGugC- -5'
14179 3' -51.9 NC_003521.1 + 119763 0.68 0.978836
Target:  5'- uGAAGAUCUGCUcggccuccaGGCUGCgGucCACc -3'
miRNA:   3'- uCUUCUAGACGG---------UCGACGaCuuGUGc -5'
14179 3' -51.9 NC_003521.1 + 162587 0.68 0.978836
Target:  5'- -----cUCUGCCGGCUGCgguGGCACu -3'
miRNA:   3'- ucuucuAGACGGUCGACGac-UUGUGc -5'
14179 3' -51.9 NC_003521.1 + 130231 0.68 0.98104
Target:  5'- uGGAGAUCgGCC-GCgUGCUGGGCGu- -3'
miRNA:   3'- uCUUCUAGaCGGuCG-ACGACUUGUgc -5'
14179 3' -51.9 NC_003521.1 + 148450 0.68 0.98104
Target:  5'- cAGggGug--GCCGGUgcgUGCUGAugACGa -3'
miRNA:   3'- -UCuuCuagaCGGUCG---ACGACUugUGC- -5'
14179 3' -51.9 NC_003521.1 + 145135 0.68 0.983068
Target:  5'- uGGAGcUCUuUCAGCUGCUGGagaaggagucGCGCGg -3'
miRNA:   3'- uCUUCuAGAcGGUCGACGACU----------UGUGC- -5'
14179 3' -51.9 NC_003521.1 + 111758 0.68 0.984928
Target:  5'- cGAGGGUCUgcGCCAGCU-CaGGGCGCc -3'
miRNA:   3'- uCUUCUAGA--CGGUCGAcGaCUUGUGc -5'
14179 3' -51.9 NC_003521.1 + 196443 0.69 0.968103
Target:  5'- --cGGGUCgGCCGGCUGCc--GCGCGa -3'
miRNA:   3'- ucuUCUAGaCGGUCGACGacuUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 123682 0.69 0.967793
Target:  5'- uGGccAUCUgcGCCAGCUGCUGGucgaucaucgagcGCACGa -3'
miRNA:   3'- uCUucUAGA--CGGUCGACGACU-------------UGUGC- -5'
14179 3' -51.9 NC_003521.1 + 130092 0.69 0.964905
Target:  5'- gAGuGGAaCUGCCAGCUGCcGGGC-Cu -3'
miRNA:   3'- -UCuUCUaGACGGUCGACGaCUUGuGc -5'
14179 3' -51.9 NC_003521.1 + 167359 0.72 0.874646
Target:  5'- aAGAcGAUCga-CAGCUGCUGggUACa -3'
miRNA:   3'- -UCUuCUAGacgGUCGACGACuuGUGc -5'
14179 3' -51.9 NC_003521.1 + 193159 0.71 0.908386
Target:  5'- cGGggGcGUCUGCU-GCUGCUGuuGCGCa -3'
miRNA:   3'- -UCuuC-UAGACGGuCGACGACu-UGUGc -5'
14179 3' -51.9 NC_003521.1 + 220415 0.71 0.914424
Target:  5'- cGAAGGUgaagGCCAGCUGaaagacGAGCACGg -3'
miRNA:   3'- uCUUCUAga--CGGUCGACga----CUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 64336 0.71 0.92577
Target:  5'- gAGcAGAUgaGCCAGCUGCaggcccUGGGCGCc -3'
miRNA:   3'- -UCuUCUAgaCGGUCGACG------ACUUGUGc -5'
14179 3' -51.9 NC_003521.1 + 75259 0.71 0.931077
Target:  5'- cGAGGAgg-GCCGGCUGCacauGCACGu -3'
miRNA:   3'- uCUUCUagaCGGUCGACGacu-UGUGC- -5'
14179 3' -51.9 NC_003521.1 + 34988 0.7 0.94282
Target:  5'- cAGAAGGUCUccgggGCCAGCgagcGCUugcgucgugcccggcGGACGCGg -3'
miRNA:   3'- -UCUUCUAGA-----CGGUCGa---CGA---------------CUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 206113 0.69 0.961488
Target:  5'- aGGGAGGcCgGUCAGCUGCU--GCGCGa -3'
miRNA:   3'- -UCUUCUaGaCGGUCGACGAcuUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 58394 0.69 0.964905
Target:  5'- aGGggGAUCUGCCgcGGCcGCguGAUGCGg -3'
miRNA:   3'- -UCuuCUAGACGG--UCGaCGacUUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.