miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14179 3' -51.9 NC_003521.1 + 75259 0.71 0.931077
Target:  5'- cGAGGAgg-GCCGGCUGCacauGCACGu -3'
miRNA:   3'- uCUUCUagaCGGUCGACGacu-UGUGC- -5'
14179 3' -51.9 NC_003521.1 + 76277 0.68 0.976199
Target:  5'- aGGAAGAgucgCUGCC-GCUGCUGcgaguccggguccGGCAgCGg -3'
miRNA:   3'- -UCUUCUa---GACGGuCGACGAC-------------UUGU-GC- -5'
14179 3' -51.9 NC_003521.1 + 80350 0.67 0.990854
Target:  5'- gGGAAGAgCUGCUccagcGGCUGCaUGuACAUGc -3'
miRNA:   3'- -UCUUCUaGACGG-----UCGACG-ACuUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 84358 0.66 0.995072
Target:  5'- aAGGAGccgGUCUGCgAGCUGaucugacaguugggcUUGAGCACc -3'
miRNA:   3'- -UCUUC---UAGACGgUCGAC---------------GACUUGUGc -5'
14179 3' -51.9 NC_003521.1 + 86390 0.67 0.989582
Target:  5'- gGGAAGAaggGCCAGCggucgacGCgggGGACGCGc -3'
miRNA:   3'- -UCUUCUagaCGGUCGa------CGa--CUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 87475 1.09 0.009872
Target:  5'- cAGAAGAUCUGCCAGCUGCUGAACACGu -3'
miRNA:   3'- -UCUUCUAGACGGUCGACGACUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 98818 0.69 0.968103
Target:  5'- cGAGGcgUUG-CAGCUGCUuGGCGCGg -3'
miRNA:   3'- uCUUCuaGACgGUCGACGAcUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 100801 0.67 0.989582
Target:  5'- aAGAGGGUC-GCCugGGCUGCgacugUGAuuguuGCGCGg -3'
miRNA:   3'- -UCUUCUAGaCGG--UCGACG-----ACU-----UGUGC- -5'
14179 3' -51.9 NC_003521.1 + 101461 0.67 0.992
Target:  5'- cGgcGcUCUucGCCAGCUGCUacAACACGa -3'
miRNA:   3'- uCuuCuAGA--CGGUCGACGAc-UUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 108818 0.67 0.987265
Target:  5'- aGGAacgGGAUCUgguacgaauugcgcaGCucCAGCUGCgUGAACACGc -3'
miRNA:   3'- -UCU---UCUAGA---------------CG--GUCGACG-ACUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 110446 0.68 0.98104
Target:  5'- aAGAA-AUC-GCCGGUggcGCUGAGCGCGc -3'
miRNA:   3'- -UCUUcUAGaCGGUCGa--CGACUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 111758 0.68 0.984928
Target:  5'- cGAGGGUCUgcGCCAGCU-CaGGGCGCc -3'
miRNA:   3'- uCUUCUAGA--CGGUCGAcGaCUUGUGc -5'
14179 3' -51.9 NC_003521.1 + 114750 0.67 0.989582
Target:  5'- uGGggGuggCgcgGCCacAGC-GCUGGACACGg -3'
miRNA:   3'- -UCuuCua-Ga--CGG--UCGaCGACUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 116062 0.7 0.949876
Target:  5'- cAGGAGAUCaaCCagcGGCUGCUGAuCAUGg -3'
miRNA:   3'- -UCUUCUAGacGG---UCGACGACUuGUGC- -5'
14179 3' -51.9 NC_003521.1 + 116303 0.67 0.989174
Target:  5'- uGGAGGAcagcuccaugCUGCUcgucaagugccaagAGCUGCUG-ACGCGg -3'
miRNA:   3'- -UCUUCUa---------GACGG--------------UCGACGACuUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 118182 0.68 0.98104
Target:  5'- -cAGGAccugCUGCCcaugcGGCUGUUGAGCGCc -3'
miRNA:   3'- ucUUCUa---GACGG-----UCGACGACUUGUGc -5'
14179 3' -51.9 NC_003521.1 + 119235 0.66 0.993029
Target:  5'- cAGcuGGUgUGCUcGCUGgaGAACACGc -3'
miRNA:   3'- -UCuuCUAgACGGuCGACgaCUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 119763 0.68 0.978836
Target:  5'- uGAAGAUCUGCUcggccuccaGGCUGCgGucCACc -3'
miRNA:   3'- uCUUCUAGACGG---------UCGACGaCuuGUGc -5'
14179 3' -51.9 NC_003521.1 + 122117 0.67 0.986627
Target:  5'- cAGcGGcGUCUcGCC-GCgGCUGAACACGg -3'
miRNA:   3'- -UCuUC-UAGA-CGGuCGaCGACUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 123682 0.69 0.967793
Target:  5'- uGGccAUCUgcGCCAGCUGCUGGucgaucaucgagcGCACGa -3'
miRNA:   3'- uCUucUAGA--CGGUCGACGACU-------------UGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.