miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14179 3' -51.9 NC_003521.1 + 220415 0.71 0.914424
Target:  5'- cGAAGGUgaagGCCAGCUGaaagacGAGCACGg -3'
miRNA:   3'- uCUUCUAga--CGGUCGACga----CUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 64336 0.71 0.92577
Target:  5'- gAGcAGAUgaGCCAGCUGCaggcccUGGGCGCc -3'
miRNA:   3'- -UCuUCUAgaCGGUCGACG------ACUUGUGc -5'
14179 3' -51.9 NC_003521.1 + 75259 0.71 0.931077
Target:  5'- cGAGGAgg-GCCGGCUGCacauGCACGu -3'
miRNA:   3'- uCUUCUagaCGGUCGACGacu-UGUGC- -5'
14179 3' -51.9 NC_003521.1 + 34988 0.7 0.94282
Target:  5'- cAGAAGGUCUccgggGCCAGCgagcGCUugcgucgugcccggcGGACGCGg -3'
miRNA:   3'- -UCUUCUAGA-----CGGUCGa---CGA---------------CUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 206113 0.69 0.961488
Target:  5'- aGGGAGGcCgGUCAGCUGCU--GCGCGa -3'
miRNA:   3'- -UCUUCUaGaCGGUCGACGAcuUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 33225 0.68 0.973868
Target:  5'- cAGAcGGAUCUugcaGCCGGC-GUUGAGCugGc -3'
miRNA:   3'- -UCU-UCUAGA----CGGUCGaCGACUUGugC- -5'
14179 3' -51.9 NC_003521.1 + 144749 0.68 0.973868
Target:  5'- cGAGGAgCUGacCCGGCUGCUGGcgguCugGg -3'
miRNA:   3'- uCUUCUaGAC--GGUCGACGACUu---GugC- -5'
14179 3' -51.9 NC_003521.1 + 196443 0.69 0.968103
Target:  5'- --cGGGUCgGCCGGCUGCc--GCGCGa -3'
miRNA:   3'- ucuUCUAGaCGGUCGACGacuUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 123682 0.69 0.967793
Target:  5'- uGGccAUCUgcGCCAGCUGCUGGucgaucaucgagcGCACGa -3'
miRNA:   3'- uCUucUAGA--CGGUCGACGACU-------------UGUGC- -5'
14179 3' -51.9 NC_003521.1 + 130092 0.69 0.964905
Target:  5'- gAGuGGAaCUGCCAGCUGCcGGGC-Cu -3'
miRNA:   3'- -UCuUCUaGACGGUCGACGaCUUGuGc -5'
14179 3' -51.9 NC_003521.1 + 58394 0.69 0.964905
Target:  5'- aGGggGAUCUGCCgcGGCcGCguGAUGCGg -3'
miRNA:   3'- -UCuuCUAGACGG--UCGaCGacUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 71138 0.7 0.953978
Target:  5'- --cAGAUCcGCguGCUGCUGAagaaucACACGc -3'
miRNA:   3'- ucuUCUAGaCGguCGACGACU------UGUGC- -5'
14179 3' -51.9 NC_003521.1 + 116062 0.7 0.949876
Target:  5'- cAGGAGAUCaaCCagcGGCUGCUGAuCAUGg -3'
miRNA:   3'- -UCUUCUAGacGG---UCGACGACUuGUGC- -5'
14179 3' -51.9 NC_003521.1 + 199577 0.7 0.949876
Target:  5'- cGAGGccacguucGUCcccagcagUGCUGGUUGCUGAGCACGa -3'
miRNA:   3'- uCUUC--------UAG--------ACGGUCGACGACUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 195681 0.7 0.949876
Target:  5'- uAGAAGAUCUGCgGGaugucCUGCcgGuGCACGa -3'
miRNA:   3'- -UCUUCUAGACGgUC-----GACGa-CuUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 187062 0.7 0.94096
Target:  5'- gGGAAGGg-UGCCAGCgaGCggaGGGCGCGg -3'
miRNA:   3'- -UCUUCUagACGGUCGa-CGa--CUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 156139 0.7 0.94096
Target:  5'- uGGAGGUgUGCacgCAGCUGCUG-GCGCu -3'
miRNA:   3'- uCUUCUAgACG---GUCGACGACuUGUGc -5'
14179 3' -51.9 NC_003521.1 + 137171 0.71 0.908386
Target:  5'- cGGAGg---GCCAgguGCUGCUGAGCAUGg -3'
miRNA:   3'- uCUUCuagaCGGU---CGACGACUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 8035 0.73 0.85171
Target:  5'- cGGAGGcgUUGagaaCCAGCUGCUGAGgGCa -3'
miRNA:   3'- -UCUUCuaGAC----GGUCGACGACUUgUGc -5'
14179 3' -51.9 NC_003521.1 + 211224 0.66 0.996141
Target:  5'- uGAAGGUCUugGUCAGCagGCUGuugggaauACACa -3'
miRNA:   3'- uCUUCUAGA--CGGUCGa-CGACu-------UGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.