miRNA display CGI


Results 41 - 60 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14183 3' -57.6 NC_003521.1 + 68373 0.71 0.745079
Target:  5'- cCGGCccuGCCUCCcCUcUCCUCGU-CGUCu -3'
miRNA:   3'- cGCCG---CGGAGGaGA-AGGAGCAaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 69313 0.71 0.698088
Target:  5'- gGCGGCGCCgUCCUCgcuuUCCaaacagcugUCGcgguacUCGCCc -3'
miRNA:   3'- -CGCCGCGG-AGGAGa---AGG---------AGCa-----AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 71179 0.67 0.889124
Target:  5'- uCGGCGuCCUCCaggUCcaccUCCUCGaaUUCGCa -3'
miRNA:   3'- cGCCGC-GGAGG---AGa---AGGAGC--AAGCGg -5'
14183 3' -57.6 NC_003521.1 + 72319 0.72 0.678888
Target:  5'- gGCGuCGCCgUCCUCcgCCUCcGUcUCGCCg -3'
miRNA:   3'- -CGCcGCGG-AGGAGaaGGAG-CA-AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 72703 0.73 0.587737
Target:  5'- aCGGCGCUgucgUCCUCggcgauccacgccUCCUCGgucUUCGCCg -3'
miRNA:   3'- cGCCGCGG----AGGAGa------------AGGAGC---AAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 73155 0.69 0.831401
Target:  5'- gGCGGCGCCgCCUCggCCUgcgaccUGgaCGCg -3'
miRNA:   3'- -CGCCGCGGaGGAGaaGGA------GCaaGCGg -5'
14183 3' -57.6 NC_003521.1 + 73225 0.69 0.83925
Target:  5'- uGCGGCGCCUCUgcgcgccgCUcUCCaUCGacacgCGCUg -3'
miRNA:   3'- -CGCCGCGGAGGa-------GA-AGG-AGCaa---GCGG- -5'
14183 3' -57.6 NC_003521.1 + 74593 0.66 0.924017
Target:  5'- cGCGGCGUC-CCgcggccggCgcgCCUCGc-CGCCg -3'
miRNA:   3'- -CGCCGCGGaGGa-------Gaa-GGAGCaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 75557 0.69 0.820139
Target:  5'- gGCGGCGgcuacgccagcgcCCUCCUg-UCCUCGUccuccucuuccgcuUCGCg -3'
miRNA:   3'- -CGCCGC-------------GGAGGAgaAGGAGCA--------------AGCGg -5'
14183 3' -57.6 NC_003521.1 + 75989 0.66 0.942994
Target:  5'- cUGGCGCCggccgccgguUCCUCcUCCcccgCGggCGCUc -3'
miRNA:   3'- cGCCGCGG----------AGGAGaAGGa---GCaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 76853 0.68 0.854432
Target:  5'- --cGCGCgUCCUCgUCCUCGgaggCGaCCg -3'
miRNA:   3'- cgcCGCGgAGGAGaAGGAGCaa--GC-GG- -5'
14183 3' -57.6 NC_003521.1 + 76880 0.67 0.907524
Target:  5'- cGCGGCcgagacuCCUCCUCg-CCUCuuucgUUGCCg -3'
miRNA:   3'- -CGCCGc------GGAGGAGaaGGAGca---AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 77096 0.69 0.823388
Target:  5'- cCGGCGCCgcucaUCCcgacgcaggauUCggCCUCGUggcCGCCg -3'
miRNA:   3'- cGCCGCGG-----AGG-----------AGaaGGAGCAa--GCGG- -5'
14183 3' -57.6 NC_003521.1 + 79633 0.66 0.933936
Target:  5'- cGCGGCGCCUCgg---CgUCGUcUGCUg -3'
miRNA:   3'- -CGCCGCGGAGgagaaGgAGCAaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 80909 1.14 0.001894
Target:  5'- gGCGGCGCCUCCUCUUCCUCGUUCGCCg -3'
miRNA:   3'- -CGCCGCGGAGGAGAAGGAGCAAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 83773 0.67 0.9016
Target:  5'- gGCGGCGCCccccgCCgcgC-UCCUCcgaccgCGCCc -3'
miRNA:   3'- -CGCCGCGGa----GGa--GaAGGAGcaa---GCGG- -5'
14183 3' -57.6 NC_003521.1 + 84355 0.67 0.897945
Target:  5'- --aGCGCCUCCUCcgCCUCcuggauguagcugugGUagGCCg -3'
miRNA:   3'- cgcCGCGGAGGAGaaGGAG---------------CAagCGG- -5'
14183 3' -57.6 NC_003521.1 + 84656 0.7 0.781112
Target:  5'- cGUGG-GUCUCCUCcgCCUCGccaccgUCGUCg -3'
miRNA:   3'- -CGCCgCGGAGGAGaaGGAGCa-----AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 87783 0.66 0.924017
Target:  5'- gGgGGcCGCCUCgUCggUCUCGggCgGCCu -3'
miRNA:   3'- -CgCC-GCGGAGgAGaaGGAGCaaG-CGG- -5'
14183 3' -57.6 NC_003521.1 + 88951 0.66 0.933936
Target:  5'- aGCGagaGCGCCgccagaaCCUCUcgcgUCUCG-UCGCCc -3'
miRNA:   3'- -CGC---CGCGGa------GGAGAa---GGAGCaAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.