miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14183 3' -57.6 NC_003521.1 + 36085 0.74 0.553216
Target:  5'- gGCGGCGCCUCCaUCaccacCCUCGccacccucccCGCCg -3'
miRNA:   3'- -CGCCGCGGAGG-AGaa---GGAGCaa--------GCGG- -5'
14183 3' -57.6 NC_003521.1 + 36744 0.67 0.895466
Target:  5'- cGCGGUGCCcuUCCUCUcgcugUCCaaGgaCGCg -3'
miRNA:   3'- -CGCCGCGG--AGGAGA-----AGGagCaaGCGg -5'
14183 3' -57.6 NC_003521.1 + 37431 0.68 0.868889
Target:  5'- cGCGGCGCCgagCCUCUgaaggUgacgcugugggCUCGcgCGCg -3'
miRNA:   3'- -CGCCGCGGa--GGAGAa----G-----------GAGCaaGCGg -5'
14183 3' -57.6 NC_003521.1 + 42577 0.66 0.942994
Target:  5'- gGCGGCcgaGUCUCCUUUucUCCUagucuauuaccaCGgcCGCCg -3'
miRNA:   3'- -CGCCG---CGGAGGAGA--AGGA------------GCaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 43245 0.69 0.815219
Target:  5'- -gGGCGCgCUCCaUCcgCCUCa-UCGCCa -3'
miRNA:   3'- cgCCGCG-GAGG-AGaaGGAGcaAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 45452 0.72 0.64013
Target:  5'- -gGGCGCCUCg---UCCUCGggCGUCa -3'
miRNA:   3'- cgCCGCGGAGgagaAGGAGCaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 47976 0.7 0.772265
Target:  5'- cGCGGCGUCgCUUCUcgUCCaCGgacgCGCCg -3'
miRNA:   3'- -CGCCGCGGaGGAGA--AGGaGCaa--GCGG- -5'
14183 3' -57.6 NC_003521.1 + 48851 0.68 0.882578
Target:  5'- cGCGGgaggaaaGCCUCgUUgUCCUCGU-CGUCu -3'
miRNA:   3'- -CGCCg------CGGAGgAGaAGGAGCAaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 50117 0.67 0.895466
Target:  5'- cCGGCGUCUCgauUUCUUCCUCc--CGUCu -3'
miRNA:   3'- cGCCGCGGAG---GAGAAGGAGcaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 50237 0.75 0.506363
Target:  5'- cGCGGgGCCacUCCUCgcCCUCGaucaCGCCg -3'
miRNA:   3'- -CGCCgCGG--AGGAGaaGGAGCaa--GCGG- -5'
14183 3' -57.6 NC_003521.1 + 52549 0.68 0.882578
Target:  5'- -aGGCcCCUCUUCUUCCgcagaCGCCg -3'
miRNA:   3'- cgCCGcGGAGGAGAAGGagcaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 53054 0.71 0.745079
Target:  5'- gGCGGCG-UUCUUCUUUgaUCGggCGCCg -3'
miRNA:   3'- -CGCCGCgGAGGAGAAGg-AGCaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 53383 0.71 0.72368
Target:  5'- cGCGGCGCaccagcuucugcagCUCCUUgcgggCgUCGggCGCCa -3'
miRNA:   3'- -CGCCGCG--------------GAGGAGaa---GgAGCaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 57550 0.73 0.620688
Target:  5'- -aGGCcccgaaauCCUCCUCgUCCUCGcgCGCCu -3'
miRNA:   3'- cgCCGc-------GGAGGAGaAGGAGCaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 57947 0.67 0.918734
Target:  5'- aGCGGUcCCUCCUCgaUCUcgcuaucaucaUCGUccUCGCUg -3'
miRNA:   3'- -CGCCGcGGAGGAGa-AGG-----------AGCA--AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 59053 0.67 0.9016
Target:  5'- aGCGcCGUCUCCagcUCguugUCCUCGUcgGCCg -3'
miRNA:   3'- -CGCcGCGGAGG---AGa---AGGAGCAagCGG- -5'
14183 3' -57.6 NC_003521.1 + 60764 0.69 0.823388
Target:  5'- cGCGGgagaauccccgcCGCCUCCUCUUCCcauuUCuaccaGCCg -3'
miRNA:   3'- -CGCC------------GCGGAGGAGAAGG----AGcaag-CGG- -5'
14183 3' -57.6 NC_003521.1 + 61048 0.66 0.933936
Target:  5'- gGUGGaCGCCUCCgUCUUCaagaCGgugCGCg -3'
miRNA:   3'- -CGCC-GCGGAGG-AGAAGga--GCaa-GCGg -5'
14183 3' -57.6 NC_003521.1 + 62816 0.67 0.907524
Target:  5'- cGUGGcCGCCUCCg--UCCUacc-CGCCc -3'
miRNA:   3'- -CGCC-GCGGAGGagaAGGAgcaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 63248 0.71 0.698088
Target:  5'- gGCGGCGCCgccaCCUuugacgagucCUUCCUCGg-CGaCCg -3'
miRNA:   3'- -CGCCGCGGa---GGA----------GAAGGAGCaaGC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.