miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14183 3' -57.6 NC_003521.1 + 1746 0.66 0.935816
Target:  5'- aCGaUGCCUCguccucagccaggcuCUCUUCCUCGgaacacggCGCCg -3'
miRNA:   3'- cGCcGCGGAG---------------GAGAAGGAGCaa------GCGG- -5'
14183 3' -57.6 NC_003521.1 + 4330 0.71 0.726495
Target:  5'- gGUGGCugguCCUCCUCggUCUCGgacggaccggUUCGCCg -3'
miRNA:   3'- -CGCCGc---GGAGGAGaaGGAGC----------AAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 6266 0.67 0.907524
Target:  5'- uCGGCGCCaCCUCU-CUUCG--CGCUc -3'
miRNA:   3'- cGCCGCGGaGGAGAaGGAGCaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 7100 0.7 0.789838
Target:  5'- gGCGGCGuCCUCCUUcUCCa-GgcCGCUg -3'
miRNA:   3'- -CGCCGC-GGAGGAGaAGGagCaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 16887 0.72 0.649846
Target:  5'- cGCGGcCGCCUCgaCccCCUCGgccgCGCCu -3'
miRNA:   3'- -CGCC-GCGGAGgaGaaGGAGCaa--GCGG- -5'
14183 3' -57.6 NC_003521.1 + 19493 0.68 0.875832
Target:  5'- aGCGGCaGCCU--UCUUCCUCucagcugUCGCg -3'
miRNA:   3'- -CGCCG-CGGAggAGAAGGAGca-----AGCGg -5'
14183 3' -57.6 NC_003521.1 + 21411 0.66 0.942994
Target:  5'- aCGGC-CCUCuggcagcuaCUCggCCUCGUcgugcccgUCGCCu -3'
miRNA:   3'- cGCCGcGGAG---------GAGaaGGAGCA--------AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 22315 0.67 0.913236
Target:  5'- aCGGUcuGCCUgCUgg-CCUgGUUCGCCu -3'
miRNA:   3'- cGCCG--CGGAgGAgaaGGAgCAAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 22374 0.66 0.929084
Target:  5'- cGUGGUGCCggCCaugUCCUCcGUggugcCGCCg -3'
miRNA:   3'- -CGCCGCGGa-GGagaAGGAG-CAa----GCGG- -5'
14183 3' -57.6 NC_003521.1 + 24266 0.66 0.938118
Target:  5'- gGCGGCGaCCUggaucucCCUCggcaggUCCaUCGguaUCGCUu -3'
miRNA:   3'- -CGCCGC-GGA-------GGAGa-----AGG-AGCa--AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 24333 0.69 0.815219
Target:  5'- uCGGCcuCCUgCUCUUCCagaucgCGUUCGCg -3'
miRNA:   3'- cGCCGc-GGAgGAGAAGGa-----GCAAGCGg -5'
14183 3' -57.6 NC_003521.1 + 24573 0.73 0.620688
Target:  5'- uCGGCgGCCUCCUCgUCCaccucccgcUCGUagGCCu -3'
miRNA:   3'- cGCCG-CGGAGGAGaAGG---------AGCAagCGG- -5'
14183 3' -57.6 NC_003521.1 + 24691 0.69 0.815219
Target:  5'- gGUGGC-CUUCCUCUgccgcggCCUCcg-CGCCg -3'
miRNA:   3'- -CGCCGcGGAGGAGAa------GGAGcaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 25439 0.67 0.9016
Target:  5'- cUGGUGCCcuuccuggccgUCCUCUgCCUCuacugCGCCg -3'
miRNA:   3'- cGCCGCGG-----------AGGAGAaGGAGcaa--GCGG- -5'
14183 3' -57.6 NC_003521.1 + 26359 0.69 0.831401
Target:  5'- cGUGGC-CUUCCUC-UCCUUcagCGCCg -3'
miRNA:   3'- -CGCCGcGGAGGAGaAGGAGcaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 27507 0.69 0.815219
Target:  5'- aCGGCGCCaUCCUCUUCaucaugaUGUcCGUCa -3'
miRNA:   3'- cGCCGCGG-AGGAGAAGga-----GCAaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 27911 0.68 0.879904
Target:  5'- aCaGCGCCUCCUCggacaccagaucaUCCuUCGaUUCGUCa -3'
miRNA:   3'- cGcCGCGGAGGAGa------------AGG-AGC-AAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 28955 0.66 0.924017
Target:  5'- cGCGGCGC--CCUCUaCCUCuacCGUCa -3'
miRNA:   3'- -CGCCGCGgaGGAGAaGGAGcaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 31737 0.67 0.895466
Target:  5'- cGCGGCcaccGCCUCCgccgCCUCGacCGgCa -3'
miRNA:   3'- -CGCCG----CGGAGGagaaGGAGCaaGCgG- -5'
14183 3' -57.6 NC_003521.1 + 35057 0.74 0.542782
Target:  5'- uGCGGCGCCaCCacacaggUCUUCCUcCGggCGCUc -3'
miRNA:   3'- -CGCCGCGGaGG-------AGAAGGA-GCaaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.