Results 1 - 20 of 180 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14183 | 3' | -57.6 | NC_003521.1 | + | 63248 | 0.71 | 0.698088 |
Target: 5'- gGCGGCGCCgccaCCUuugacgagucCUUCCUCGg-CGaCCg -3' miRNA: 3'- -CGCCGCGGa---GGA----------GAAGGAGCaaGC-GG- -5' |
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14183 | 3' | -57.6 | NC_003521.1 | + | 214750 | 0.72 | 0.637214 |
Target: 5'- aGCGccgcCGUCUCCUCUUCCUccucuccccccuccCGcUCGCCg -3' miRNA: 3'- -CGCc---GCGGAGGAGAAGGA--------------GCaAGCGG- -5' |
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14183 | 3' | -57.6 | NC_003521.1 | + | 45452 | 0.72 | 0.64013 |
Target: 5'- -gGGCGCCUCg---UCCUCGggCGUCa -3' miRNA: 3'- cgCCGCGGAGgagaAGGAGCaaGCGG- -5' |
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14183 | 3' | -57.6 | NC_003521.1 | + | 16887 | 0.72 | 0.649846 |
Target: 5'- cGCGGcCGCCUCgaCccCCUCGgccgCGCCu -3' miRNA: 3'- -CGCC-GCGGAGgaGaaGGAGCaa--GCGG- -5' |
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14183 | 3' | -57.6 | NC_003521.1 | + | 117127 | 0.72 | 0.659549 |
Target: 5'- aGCcGcCGCCUCCUCUUCCacCGccaCGCCg -3' miRNA: 3'- -CGcC-GCGGAGGAGAAGGa-GCaa-GCGG- -5' |
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14183 | 3' | -57.6 | NC_003521.1 | + | 164553 | 0.72 | 0.659549 |
Target: 5'- aGCGGCaGCga-CUCUUCCUC--UCGCCa -3' miRNA: 3'- -CGCCG-CGgagGAGAAGGAGcaAGCGG- -5' |
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14183 | 3' | -57.6 | NC_003521.1 | + | 151226 | 0.72 | 0.669232 |
Target: 5'- cGCGGCGCCUUCuucaUCUUCUUCcgcgGCCu -3' miRNA: 3'- -CGCCGCGGAGG----AGAAGGAGcaagCGG- -5' |
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14183 | 3' | -57.6 | NC_003521.1 | + | 163980 | 0.72 | 0.688509 |
Target: 5'- gGCGGuCGCCgggCCUUcUCCUCGUccUCuucggGCCg -3' miRNA: 3'- -CGCC-GCGGa--GGAGaAGGAGCA--AG-----CGG- -5' |
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14183 | 3' | -57.6 | NC_003521.1 | + | 104157 | 0.71 | 0.698088 |
Target: 5'- cCGGCGCCUguguggCUUCUUgCUCugUCGCCg -3' miRNA: 3'- cGCCGCGGA------GGAGAAgGAGcaAGCGG- -5' |
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14183 | 3' | -57.6 | NC_003521.1 | + | 57550 | 0.73 | 0.620688 |
Target: 5'- -aGGCcccgaaauCCUCCUCgUCCUCGcgCGCCu -3' miRNA: 3'- cgCCGc-------GGAGGAGaAGGAGCaaGCGG- -5' |
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14183 | 3' | -57.6 | NC_003521.1 | + | 72703 | 0.73 | 0.587737 |
Target: 5'- aCGGCGCUgucgUCCUCggcgauccacgccUCCUCGgucUUCGCCg -3' miRNA: 3'- cGCCGCGG----AGGAGa------------AGGAGC---AAGCGG- -5' |
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14183 | 3' | -57.6 | NC_003521.1 | + | 117390 | 0.74 | 0.562752 |
Target: 5'- aCGGCGCCUCCg--UCCUauccCGCCg -3' miRNA: 3'- cGCCGCGGAGGagaAGGAgcaaGCGG- -5' |
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14183 | 3' | -57.6 | NC_003521.1 | + | 221848 | 0.85 | 0.144888 |
Target: 5'- cGCGGCGCgUCCUCgacccccUCCUCGUugUCGCUg -3' miRNA: 3'- -CGCCGCGgAGGAGa------AGGAGCA--AGCGG- -5' |
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14183 | 3' | -57.6 | NC_003521.1 | + | 145262 | 0.83 | 0.180083 |
Target: 5'- -gGGCGCCUCCUCggCCUCGgcgGCCa -3' miRNA: 3'- cgCCGCGGAGGAGaaGGAGCaagCGG- -5' |
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14183 | 3' | -57.6 | NC_003521.1 | + | 221938 | 0.8 | 0.292384 |
Target: 5'- cGCGGCGCCUCg---UCCUCGU-CGCUg -3' miRNA: 3'- -CGCCGCGGAGgagaAGGAGCAaGCGG- -5' |
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14183 | 3' | -57.6 | NC_003521.1 | + | 160356 | 0.77 | 0.410141 |
Target: 5'- uCGuCGuCCUCCUCUUCCUCGU-CGUCg -3' miRNA: 3'- cGCcGC-GGAGGAGAAGGAGCAaGCGG- -5' |
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14183 | 3' | -57.6 | NC_003521.1 | + | 50237 | 0.75 | 0.506363 |
Target: 5'- cGCGGgGCCacUCCUCgcCCUCGaucaCGCCg -3' miRNA: 3'- -CGCCgCGG--AGGAGaaGGAGCaa--GCGG- -5' |
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14183 | 3' | -57.6 | NC_003521.1 | + | 35057 | 0.74 | 0.542782 |
Target: 5'- uGCGGCGCCaCCacacaggUCUUCCUcCGggCGCUc -3' miRNA: 3'- -CGCCGCGGaGG-------AGAAGGA-GCaaGCGG- -5' |
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14183 | 3' | -57.6 | NC_003521.1 | + | 36085 | 0.74 | 0.553216 |
Target: 5'- gGCGGCGCCUCCaUCaccacCCUCGccacccucccCGCCg -3' miRNA: 3'- -CGCCGCGGAGG-AGaa---GGAGCaa--------GCGG- -5' |
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14183 | 3' | -57.6 | NC_003521.1 | + | 102156 | 0.74 | 0.558932 |
Target: 5'- gGUGGCGucuccccCCUCCUCUUCCUucgucuugggguggCGacuUUCGCCg -3' miRNA: 3'- -CGCCGC-------GGAGGAGAAGGA--------------GC---AAGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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