Results 1 - 20 of 180 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14183 | 3' | -57.6 | NC_003521.1 | + | 24266 | 0.66 | 0.938118 |
Target: 5'- gGCGGCGaCCUggaucucCCUCggcaggUCCaUCGguaUCGCUu -3' miRNA: 3'- -CGCCGC-GGA-------GGAGa-----AGG-AGCa--AGCGG- -5' |
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14183 | 3' | -57.6 | NC_003521.1 | + | 223303 | 0.66 | 0.942994 |
Target: 5'- aGCGGaugGCgUCCUCgcagCgCUCGUcgCGCUg -3' miRNA: 3'- -CGCCg--CGgAGGAGaa--G-GAGCAa-GCGG- -5' |
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14183 | 3' | -57.6 | NC_003521.1 | + | 120977 | 0.66 | 0.942994 |
Target: 5'- uGCGGUccGCCagCUCgUCCUCGUcggagucggaGCCg -3' miRNA: 3'- -CGCCG--CGGagGAGaAGGAGCAag--------CGG- -5' |
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14183 | 3' | -57.6 | NC_003521.1 | + | 88951 | 0.66 | 0.933936 |
Target: 5'- aGCGagaGCGCCgccagaaCCUCUcgcgUCUCG-UCGCCc -3' miRNA: 3'- -CGC---CGCGGa------GGAGAa---GGAGCaAGCGG- -5' |
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14183 | 3' | -57.6 | NC_003521.1 | + | 74593 | 0.66 | 0.924017 |
Target: 5'- cGCGGCGUC-CCgcggccggCgcgCCUCGc-CGCCg -3' miRNA: 3'- -CGCCGCGGaGGa-------Gaa-GGAGCaaGCGG- -5' |
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14183 | 3' | -57.6 | NC_003521.1 | + | 187651 | 0.66 | 0.933936 |
Target: 5'- aCGGCGUCgCCgaccUCCUCGc-CGCCg -3' miRNA: 3'- cGCCGCGGaGGaga-AGGAGCaaGCGG- -5' |
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14183 | 3' | -57.6 | NC_003521.1 | + | 28955 | 0.66 | 0.924017 |
Target: 5'- cGCGGCGC--CCUCUaCCUCuacCGUCa -3' miRNA: 3'- -CGCCGCGgaGGAGAaGGAGcaaGCGG- -5' |
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14183 | 3' | -57.6 | NC_003521.1 | + | 184182 | 0.66 | 0.924017 |
Target: 5'- uGCGGCGUCgUCCUCcaugCUUCGUccucUCaCCu -3' miRNA: 3'- -CGCCGCGG-AGGAGaa--GGAGCA----AGcGG- -5' |
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14183 | 3' | -57.6 | NC_003521.1 | + | 79633 | 0.66 | 0.933936 |
Target: 5'- cGCGGCGCCUCgg---CgUCGUcUGCUg -3' miRNA: 3'- -CGCCGCGGAGgagaaGgAGCAaGCGG- -5' |
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14183 | 3' | -57.6 | NC_003521.1 | + | 201973 | 0.66 | 0.935816 |
Target: 5'- aCGaUGCCUCguccucagccaggcuCUCUUCCUCGgaacacggCGCCg -3' miRNA: 3'- cGCcGCGGAG---------------GAGAAGGAGCaa------GCGG- -5' |
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14183 | 3' | -57.6 | NC_003521.1 | + | 221357 | 0.66 | 0.942994 |
Target: 5'- uGCGGCGgUagaggaggggUCCUCgucgUCCUCcucUUCGUCu -3' miRNA: 3'- -CGCCGCgG----------AGGAGa---AGGAGc--AAGCGG- -5' |
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14183 | 3' | -57.6 | NC_003521.1 | + | 223660 | 0.66 | 0.929084 |
Target: 5'- uGCcaGCGCUgcgCCUCggCCUCG--CGCCg -3' miRNA: 3'- -CGc-CGCGGa--GGAGaaGGAGCaaGCGG- -5' |
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14183 | 3' | -57.6 | NC_003521.1 | + | 130110 | 0.66 | 0.942994 |
Target: 5'- cCGG-GCCUCUUCUgccccugcgUCgUCGgcggCGCCg -3' miRNA: 3'- cGCCgCGGAGGAGA---------AGgAGCaa--GCGG- -5' |
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14183 | 3' | -57.6 | NC_003521.1 | + | 172446 | 0.66 | 0.938572 |
Target: 5'- aCGGCGuccaCCUCgCUCUUcaCCUCGUggUUGCg -3' miRNA: 3'- cGCCGC----GGAG-GAGAA--GGAGCA--AGCGg -5' |
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14183 | 3' | -57.6 | NC_003521.1 | + | 148520 | 0.66 | 0.929084 |
Target: 5'- cGCGGCugcGCCUCCUC--CCg----CGCCu -3' miRNA: 3'- -CGCCG---CGGAGGAGaaGGagcaaGCGG- -5' |
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14183 | 3' | -57.6 | NC_003521.1 | + | 112377 | 0.66 | 0.928088 |
Target: 5'- uGCGGCGUCUCgUCcaCCUgGcuggcgcagugCGCCg -3' miRNA: 3'- -CGCCGCGGAGgAGaaGGAgCaa---------GCGG- -5' |
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14183 | 3' | -57.6 | NC_003521.1 | + | 92143 | 0.66 | 0.938572 |
Target: 5'- gGCGGgGCUUCCcggcucCUUCCacCGgcUCGCCc -3' miRNA: 3'- -CGCCgCGGAGGa-----GAAGGa-GCa-AGCGG- -5' |
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14183 | 3' | -57.6 | NC_003521.1 | + | 61048 | 0.66 | 0.933936 |
Target: 5'- gGUGGaCGCCUCCgUCUUCaagaCGgugCGCg -3' miRNA: 3'- -CGCC-GCGGAGG-AGAAGga--GCaa-GCGg -5' |
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14183 | 3' | -57.6 | NC_003521.1 | + | 42577 | 0.66 | 0.942994 |
Target: 5'- gGCGGCcgaGUCUCCUUUucUCCUagucuauuaccaCGgcCGCCg -3' miRNA: 3'- -CGCCG---CGGAGGAGA--AGGA------------GCaaGCGG- -5' |
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14183 | 3' | -57.6 | NC_003521.1 | + | 148594 | 0.66 | 0.929084 |
Target: 5'- cGCGGCGCCcgucgggcCCUCacagCgCUCG-UCGCg -3' miRNA: 3'- -CGCCGCGGa-------GGAGaa--G-GAGCaAGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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