miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14183 3' -57.6 NC_003521.1 + 80909 1.14 0.001894
Target:  5'- gGCGGCGCCUCCUCUUCCUCGUUCGCCg -3'
miRNA:   3'- -CGCCGCGGAGGAGAAGGAGCAAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 225281 0.87 0.11045
Target:  5'- -gGGCGCCcCCUCUUCCcagcgCGUUCGCCa -3'
miRNA:   3'- cgCCGCGGaGGAGAAGGa----GCAAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 221848 0.85 0.144888
Target:  5'- cGCGGCGCgUCCUCgacccccUCCUCGUugUCGCUg -3'
miRNA:   3'- -CGCCGCGgAGGAGa------AGGAGCA--AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 145262 0.83 0.180083
Target:  5'- -gGGCGCCUCCUCggCCUCGgcgGCCa -3'
miRNA:   3'- cgCCGCGGAGGAGaaGGAGCaagCGG- -5'
14183 3' -57.6 NC_003521.1 + 197194 0.83 0.18443
Target:  5'- gGCGGCcgccGCCUCCUCcucgUCCUCGUugUCGUCg -3'
miRNA:   3'- -CGCCG----CGGAGGAGa---AGGAGCA--AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 221938 0.8 0.292384
Target:  5'- cGCGGCGCCUCg---UCCUCGU-CGCUg -3'
miRNA:   3'- -CGCCGCGGAGgagaAGGAGCAaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 160390 0.78 0.370313
Target:  5'- uCGGCGCCUUCaccaUCaUCCUCG-UCGCCu -3'
miRNA:   3'- cGCCGCGGAGG----AGaAGGAGCaAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 175727 0.78 0.370313
Target:  5'- uCGGCGCCg-CUCUUCCUCcuggCGCCg -3'
miRNA:   3'- cGCCGCGGagGAGAAGGAGcaa-GCGG- -5'
14183 3' -57.6 NC_003521.1 + 185362 0.77 0.385924
Target:  5'- gGCGGCGCagugCCUCUUCCa-GcgCGCCg -3'
miRNA:   3'- -CGCCGCGga--GGAGAAGGagCaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 109941 0.77 0.401964
Target:  5'- aCGGUGCCgacgcugauacUCCUCaUCCUCGUcaucguccUCGCCg -3'
miRNA:   3'- cGCCGCGG-----------AGGAGaAGGAGCA--------AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 160356 0.77 0.410141
Target:  5'- uCGuCGuCCUCCUCUUCCUCGU-CGUCg -3'
miRNA:   3'- cGCcGC-GGAGGAGAAGGAGCAaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 205336 0.75 0.488092
Target:  5'- aCGGCGCCUCCUCggCggCGgcagcugCGCCg -3'
miRNA:   3'- cGCCGCGGAGGAGaaGgaGCaa-----GCGG- -5'
14183 3' -57.6 NC_003521.1 + 50237 0.75 0.506363
Target:  5'- cGCGGgGCCacUCCUCgcCCUCGaucaCGCCg -3'
miRNA:   3'- -CGCCgCGG--AGGAGaaGGAGCaa--GCGG- -5'
14183 3' -57.6 NC_003521.1 + 35057 0.74 0.542782
Target:  5'- uGCGGCGCCaCCacacaggUCUUCCUcCGggCGCUc -3'
miRNA:   3'- -CGCCGCGGaGG-------AGAAGGA-GCaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 107342 0.74 0.543728
Target:  5'- aGCGGCGCCaggugaUCCUCgaCCUCGggCGg- -3'
miRNA:   3'- -CGCCGCGG------AGGAGaaGGAGCaaGCgg -5'
14183 3' -57.6 NC_003521.1 + 36085 0.74 0.553216
Target:  5'- gGCGGCGCCUCCaUCaccacCCUCGccacccucccCGCCg -3'
miRNA:   3'- -CGCCGCGGAGG-AGaa---GGAGCaa--------GCGG- -5'
14183 3' -57.6 NC_003521.1 + 102156 0.74 0.558932
Target:  5'- gGUGGCGucuccccCCUCCUCUUCCUucgucuugggguggCGacuUUCGCCg -3'
miRNA:   3'- -CGCCGC-------GGAGGAGAAGGA--------------GC---AAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 117390 0.74 0.562752
Target:  5'- aCGGCGCCUCCg--UCCUauccCGCCg -3'
miRNA:   3'- cGCCGCGGAGGagaAGGAgcaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 212583 0.73 0.58195
Target:  5'- uCGGCGCCgUCUUCUUCCUC---CGUCa -3'
miRNA:   3'- cGCCGCGG-AGGAGAAGGAGcaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 72703 0.73 0.587737
Target:  5'- aCGGCGCUgucgUCCUCggcgauccacgccUCCUCGgucUUCGCCg -3'
miRNA:   3'- cGCCGCGG----AGGAGa------------AGGAGC---AAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.