miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14183 3' -57.6 NC_003521.1 + 57550 0.73 0.620688
Target:  5'- -aGGCcccgaaauCCUCCUCgUCCUCGcgCGCCu -3'
miRNA:   3'- cgCCGc-------GGAGGAGaAGGAGCaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 24573 0.73 0.620688
Target:  5'- uCGGCgGCCUCCUCgUCCaccucccgcUCGUagGCCu -3'
miRNA:   3'- cGCCG-CGGAGGAGaAGG---------AGCAagCGG- -5'
14183 3' -57.6 NC_003521.1 + 166015 0.73 0.630409
Target:  5'- uCGGCGCCgUCCg--UCCgCGUcUCGCCg -3'
miRNA:   3'- cGCCGCGG-AGGagaAGGaGCA-AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 214750 0.72 0.637214
Target:  5'- aGCGccgcCGUCUCCUCUUCCUccucuccccccuccCGcUCGCCg -3'
miRNA:   3'- -CGCc---GCGGAGGAGAAGGA--------------GCaAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 45452 0.72 0.64013
Target:  5'- -gGGCGCCUCg---UCCUCGggCGUCa -3'
miRNA:   3'- cgCCGCGGAGgagaAGGAGCaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 142435 0.72 0.649846
Target:  5'- aGCaGCGCCgCCgaagCCUCGggCGCCa -3'
miRNA:   3'- -CGcCGCGGaGGagaaGGAGCaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 16887 0.72 0.649846
Target:  5'- cGCGGcCGCCUCgaCccCCUCGgccgCGCCu -3'
miRNA:   3'- -CGCC-GCGGAGgaGaaGGAGCaa--GCGG- -5'
14183 3' -57.6 NC_003521.1 + 177589 0.72 0.649846
Target:  5'- gGCGGCGCCgCCggUUCCggcCGUUCcgcuGCCg -3'
miRNA:   3'- -CGCCGCGGaGGagAAGGa--GCAAG----CGG- -5'
14183 3' -57.6 NC_003521.1 + 164553 0.72 0.659549
Target:  5'- aGCGGCaGCga-CUCUUCCUC--UCGCCa -3'
miRNA:   3'- -CGCCG-CGgagGAGAAGGAGcaAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 117127 0.72 0.659549
Target:  5'- aGCcGcCGCCUCCUCUUCCacCGccaCGCCg -3'
miRNA:   3'- -CGcC-GCGGAGGAGAAGGa-GCaa-GCGG- -5'
14183 3' -57.6 NC_003521.1 + 151226 0.72 0.669232
Target:  5'- cGCGGCGCCUUCuucaUCUUCUUCcgcgGCCu -3'
miRNA:   3'- -CGCCGCGGAGG----AGAAGGAGcaagCGG- -5'
14183 3' -57.6 NC_003521.1 + 195871 0.72 0.673098
Target:  5'- cGCGGUgucGCCgcccuuccuccccgUCCUCUUCgUCGUccucgucuucguccUCGCCg -3'
miRNA:   3'- -CGCCG---CGG--------------AGGAGAAGgAGCA--------------AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 72319 0.72 0.678888
Target:  5'- gGCGuCGCCgUCCUCcgCCUCcGUcUCGCCg -3'
miRNA:   3'- -CGCcGCGG-AGGAGaaGGAG-CA-AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 163980 0.72 0.688509
Target:  5'- gGCGGuCGCCgggCCUUcUCCUCGUccUCuucggGCCg -3'
miRNA:   3'- -CGCC-GCGGa--GGAGaAGGAGCA--AG-----CGG- -5'
14183 3' -57.6 NC_003521.1 + 63248 0.71 0.698088
Target:  5'- gGCGGCGCCgccaCCUuugacgagucCUUCCUCGg-CGaCCg -3'
miRNA:   3'- -CGCCGCGGa---GGA----------GAAGGAGCaaGC-GG- -5'
14183 3' -57.6 NC_003521.1 + 104157 0.71 0.698088
Target:  5'- cCGGCGCCUguguggCUUCUUgCUCugUCGCCg -3'
miRNA:   3'- cGCCGCGGA------GGAGAAgGAGcaAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 69313 0.71 0.698088
Target:  5'- gGCGGCGCCgUCCUCgcuuUCCaaacagcugUCGcgguacUCGCCc -3'
miRNA:   3'- -CGCCGCGG-AGGAGa---AGG---------AGCa-----AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 141311 0.71 0.707617
Target:  5'- gGCGGCGCCccggagcCCUCUUCUgc-UUCGUCu -3'
miRNA:   3'- -CGCCGCGGa------GGAGAAGGagcAAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 162659 0.71 0.707617
Target:  5'- uCGGCGCCaCCaggaugugCCUCGUUCGCg -3'
miRNA:   3'- cGCCGCGGaGGagaa----GGAGCAAGCGg -5'
14183 3' -57.6 NC_003521.1 + 160340 0.71 0.707617
Target:  5'- cGCGGUgGCCUCCg--UCgUCGagggcgUCGCCg -3'
miRNA:   3'- -CGCCG-CGGAGGagaAGgAGCa-----AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.