miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14183 3' -57.6 NC_003521.1 + 79633 0.66 0.933936
Target:  5'- cGCGGCGCCUCgg---CgUCGUcUGCUg -3'
miRNA:   3'- -CGCCGCGGAGgagaaGgAGCAaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 61048 0.66 0.933936
Target:  5'- gGUGGaCGCCUCCgUCUUCaagaCGgugCGCg -3'
miRNA:   3'- -CGCC-GCGGAGG-AGAAGga--GCaa-GCGg -5'
14183 3' -57.6 NC_003521.1 + 187651 0.66 0.933936
Target:  5'- aCGGCGUCgCCgaccUCCUCGc-CGCCg -3'
miRNA:   3'- cGCCGCGGaGGaga-AGGAGCaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 177819 0.66 0.933936
Target:  5'- -gGGCGCCgCCggCUUCUUC--UUGCCu -3'
miRNA:   3'- cgCCGCGGaGGa-GAAGGAGcaAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 188292 0.66 0.929084
Target:  5'- -aGGgGCCUCUUUggcggcUCUUC-UUCGCCg -3'
miRNA:   3'- cgCCgCGGAGGAGa-----AGGAGcAAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 148520 0.66 0.929084
Target:  5'- cGCGGCugcGCCUCCUC--CCg----CGCCu -3'
miRNA:   3'- -CGCCG---CGGAGGAGaaGGagcaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 148594 0.66 0.929084
Target:  5'- cGCGGCGCCcgucgggcCCUCacagCgCUCG-UCGCg -3'
miRNA:   3'- -CGCCGCGGa-------GGAGaa--G-GAGCaAGCGg -5'
14183 3' -57.6 NC_003521.1 + 141834 0.66 0.929084
Target:  5'- cGCGGUaCCUCCcCUgacgCCUCcuaaaggCGCCg -3'
miRNA:   3'- -CGCCGcGGAGGaGAa---GGAGcaa----GCGG- -5'
14183 3' -57.6 NC_003521.1 + 117675 0.66 0.929084
Target:  5'- cCGGC-CCUUCUUUUCCgacg-CGCCg -3'
miRNA:   3'- cGCCGcGGAGGAGAAGGagcaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 223660 0.66 0.929084
Target:  5'- uGCcaGCGCUgcgCCUCggCCUCG--CGCCg -3'
miRNA:   3'- -CGc-CGCGGa--GGAGaaGGAGCaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 108198 0.66 0.929084
Target:  5'- gGUGGCGCCgccgCCgagUCUggaagCCguugCGgaCGCCg -3'
miRNA:   3'- -CGCCGCGGa---GG---AGAa----GGa---GCaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 22374 0.66 0.929084
Target:  5'- cGUGGUGCCggCCaugUCCUCcGUggugcCGCCg -3'
miRNA:   3'- -CGCCGCGGa-GGagaAGGAG-CAa----GCGG- -5'
14183 3' -57.6 NC_003521.1 + 112377 0.66 0.928088
Target:  5'- uGCGGCGUCUCgUCcaCCUgGcuggcgcagugCGCCg -3'
miRNA:   3'- -CGCCGCGGAGgAGaaGGAgCaa---------GCGG- -5'
14183 3' -57.6 NC_003521.1 + 201815 0.66 0.924534
Target:  5'- gGCGGCGCCcgcuccggCCUCgacaccuaCCUUGggugguaauagcgaaUCGCCa -3'
miRNA:   3'- -CGCCGCGGa-------GGAGaa------GGAGCa--------------AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 208144 0.66 0.924017
Target:  5'- cGUGGCGCCUCgauccggcagCUcCUUgCUCGacuuucCGCCg -3'
miRNA:   3'- -CGCCGCGGAG----------GA-GAAgGAGCaa----GCGG- -5'
14183 3' -57.6 NC_003521.1 + 204106 0.66 0.924017
Target:  5'- gGUGGCGCCacugcgCCUCcaccUgCUCGggccaggCGCCg -3'
miRNA:   3'- -CGCCGCGGa-----GGAGa---AgGAGCaa-----GCGG- -5'
14183 3' -57.6 NC_003521.1 + 74593 0.66 0.924017
Target:  5'- cGCGGCGUC-CCgcggccggCgcgCCUCGc-CGCCg -3'
miRNA:   3'- -CGCCGCGGaGGa-------Gaa-GGAGCaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 184182 0.66 0.924017
Target:  5'- uGCGGCGUCgUCCUCcaugCUUCGUccucUCaCCu -3'
miRNA:   3'- -CGCCGCGG-AGGAGaa--GGAGCA----AGcGG- -5'
14183 3' -57.6 NC_003521.1 + 28955 0.66 0.924017
Target:  5'- cGCGGCGC--CCUCUaCCUCuacCGUCa -3'
miRNA:   3'- -CGCCGCGgaGGAGAaGGAGcaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 87783 0.66 0.924017
Target:  5'- gGgGGcCGCCUCgUCggUCUCGggCgGCCu -3'
miRNA:   3'- -CgCC-GCGGAGgAGaaGGAGCaaG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.